Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56550 76 / 2e-17 ATOXS3 oxidative stress 3 (.1) AT4G26288 58 / 1e-10 unknown protein AT3G43850 44 / 1e-05 unknown protein AT5G24890 41 / 0.0002 unknown protein AT4G31510 39 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034985 [exp] 189 / 1e-61 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10043039 [exp] 123 / 2e-35 AT5G56550 69 / 1e-14 oxidative stress 3 (.1) Lus10011137 [exp] 119 / 5e-34 AT5G56550 74 / 2e-16 oxidative stress 3 (.1) Lus10038265 [exp] 73 / 2e-16 AT5G56550 66 / 9e-14 oxidative stress 3 (.1) Lus10025837 [exp] 70 / 5e-15 AT5G56550 65 / 2e-13 oxidative stress 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190700 [exp] 75 / 6e-17 AT5G56550 81 / 4e-19 oxidative stress 3 (.1) Potri.009G120300 [exp] 44 / 8e-06 AT4G26288 45 / 2e-06 unknown protein Potri.006G273100 [exp] 42 / 0.0001 AT5G24890 129 / 1e-36 unknown protein Potri.018G008200 [exp] 40 / 0.0003 AT5G24890 131 / 3e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012939 pacid=23158543 polypeptide=Lus10012939 locus=Lus10012939.g ID=Lus10012939.BGIv1.0 annot-version=v1.0 ATGGCCAGAAGAATCATGGGGAAATCTATGGATCAAGAAGAGTTGTTGTATGAATCAATATCTGCCAGTAAGGAGGAATCATCATCATCAATAGGCTCAG CTTCTCTTGATTCCTCATCTTGTTTCTCTGACAGCAATGATGATGACGATGGCGATGAAGCATCTTCGTCTTCTTCTTCTTCTTCTTCTTCTGCATCTTC TTCGTCCACATTGATCGCCAAGAACATGAACGATGATGAAAGCCCGCTTTACCAGTTGTCAGTGCTTATGGCTCAACTACCTATCAAGAGAGGGTTGTCG AGTTTCTACCAGGGGAAATCGCAGTCTTACACATCTCTGGGGAGTGTGAAGAGCTTGGAAGATCTGGTGAAGAAAATTCCTTCAAGGAGGAAGGTTATGC AGAAGTCCAAATGTAAAAGCTTTTGTGTGGGTTTGGACAGAGGGAGACATTGTTATGGTCCTAAGCCTGGGATTACAAAGAAGGGTTCAAGTTCCAGAGG ATCCTGTCTCTCTTCGTTAGCTAGAACATCTGTACGAGCAGCCACTTGCTTCGAGTGA
AA sequence Show only first row Show all	>Lus10012939 pacid=23158543 polypeptide=Lus10012939 locus=Lus10012939.g ID=Lus10012939.BGIv1.0 annot-version=v1.0 MARRIMGKSMDQEELLYESISASKEESSSSIGSASLDSSSCFSDSNDDDDGDEASSSSSSSSSSASSSSTLIAKNMNDDESPLYQLSVLMAQLPIKRGLS SFYQGKSQSYTSLGSVKSLEDLVKKIPSRRKVMQKSKCKSFCVGLDRGRHCYGPKPGITKKGSSSRGSCLSSLARTSVRAATCFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	0	1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	1.0	0.9743
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	1.7	0.9264
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	2.0	0.9256
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	2.4	0.9371
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	5.9	0.9252
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	6.0	0.8971
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	7.1	0.9072
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	7.3	0.8611
AT3G53630			unknown protein		Lus10024421 [exp]	8.0	0.9137
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	8.5	0.9212

Compare expression of checked genes

Lus10012939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.