Plant FIBer expression Database

Lus10012940 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26300 934 / 0 EMB1027 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1)
AT1G66530 891 / 0 Arginyl-tRNA synthetase, class Ic (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034982
[exp]
990 / 0 AT4G26300 825 / 0.0 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G198500
[exp]
971 / 0 AT4G26300 986 / 0.0 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03485 Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain
CL0039 HUP PF00750 tRNA-synt_1d tRNA synthetases class I (R)
CL0258 DALR PF05746 DALR_1 DALR anticodon binding domain
Representative CDS sequence
>Lus10012940 pacid=23158578 polypeptide=Lus10012940 locus=Lus10012940.g ID=Lus10012940.BGIv1.0 annot-version=v1.0
ATGTTAGCCTCCTCCCTAGCAGCCATCCTACTCCCGCCGGTCTCTTCTTCTCCTTCGCTTCTCTCCCTCCGTCGCCTCTCTCATCTCCCCGCCGCCGGCT
TGTTGACTGCGACTTCTCGGAAGCTTGTTTTTGCTGCTAAGTCTGAACCAATTTCCACTATGGCAACTGATGAGGACAGTGTGGGTAATCTGAAGAGGTT
GTTAGCCAAAGGATTCGAGTTGTCGCTTAACGCCACTTTTCCCGATGAGGCCGATGTTGAACCTCAGATTGCTGCATCCGCTGGAAACTTTGGAGATTAC
CAATGCAATAATGCCATGAAAATTTTCGCTCAACTCAGAGCTAAAGGTGGTAACCAGTTTAGAGGACCACCAGCAGTTGGAAAGGCTATTAAGGACAATC
TCCCTCAGACAGAGATGATTGAATCTAGCTCTGTTGCTGGGCCTGGATTTGTGAATGTTGTGTTGTCTACTGACTGGATGGCTAAGTGCATCCAAAACAT
GCTACTAGATGGGATTGATACGTGGTCACCTAAGTTGCCTATTAAGAAGGCCGTGGTTGACTTTTCCTCGCCAAATATTGCAAAAGAAATGCATGTTGGT
CATCTTAGATCTACAATTATTGGAGACACAATTGCCCGCATGCTTGAGTTCTCGAATGTCAATGTTCTTAGGAGAAACCATGTTGGTGACTGGGGAACAC
AGTTTGGCATGTTGATAGAACACCTCTTTGAACAATTTCCCAACTTTGAGGAAGTTAATGAAGCAGCTATTGGGGACCTACAGGCATTTTATAAGGCATC
AAAACAGAGATTCGATGCTGATTCTGAATTTAAGGAGCGAGCGCAAAAAGCAGTTGTTCGACTCCAGGGTGGAGAACAGAGATACAGAGATGCGTGGGCA
CAGATCTGTGCAATTAGCCGGATGGAGTTTGACAGTGTTTATGGAAGACTTAAAGTTGAGCTGGAGGAGAAGGGAGAGAGCTTTTATAATCCTTTCATAC
CTTCGGTCATAGAAGGGCTAACCAAGCAAGGGTTGGTTGAAGAGAGTGAAGGTGCCCGTGTTATTTTCCTTGAAGGATTTAACATTCCTCTCATCGTCGT
TAAGAGTGATGGTGGTTACAACTATGCCTCTACTGATCTGACTGCACTTTGGTATCGTCTAAATGAAGAGAAAGCTGAGTGGATAATCTATGTGACTGAT
GTGGGTCAACATCAGCACTTTGAGATGGTATTCAAGGCTGCTACGATTGCTGGTTGGCTCCCTACTGAGCCTAACAAATATCCTAGAACAAGCCATGTCG
GTTTTGGGCTCGTTCTTGGAGAAGATGGCAAGCGGTTTAGAACTCGATCCACAGAGGTTGTTCGATTAGCTGATTTGCTTGATGAAGCCAAGAACAGAAG
TAAAAAAGTACTTATCGAGCGTGGGAAGGATAAAGAGTGGCCAGCAGAGGAGCTTGACCAAATTGCTGAAGCAATTGGCTATGGTGCTGTCAAGTATGCC
GACTTGAAGAATAACAGAACGACAAACTATACTTTCAGTTATGAGCAAATGCTCAATGACAAGGGTAATACTGCTGTTTACCTGTTGTACGCACATGCTA
GGATATGTTCCATAATCAGAAGGTCTGCGAGAGATATTGAGGAGTTGAAGCATACGGGAATCTTATCGTTGGTGGAAAAAGATGAGCGTGTTCTTGGGCT
TCATCTGCTCCGATTTTCCGAGATTGTGGAGGAGGCATGTACGAATCTGCTGCCGAGTGTATTGTGTGAATACCTATACAATTTGTCGGAGAACTTCAGC
AAATTCTACAACAATTGTCAGGTGGTAGGGTCGGCGCAGGAAACAAGCAGACTGTTGCTATGCGAAGCAACGGCTATTGTGATGAGGAAATGCTTCTTCC
TACTTGGAATTACCCCAGTTTACAGGATATAA
AA sequence
>Lus10012940 pacid=23158578 polypeptide=Lus10012940 locus=Lus10012940.g ID=Lus10012940.BGIv1.0 annot-version=v1.0
MLASSLAAILLPPVSSSPSLLSLRRLSHLPAAGLLTATSRKLVFAAKSEPISTMATDEDSVGNLKRLLAKGFELSLNATFPDEADVEPQIAASAGNFGDY
QCNNAMKIFAQLRAKGGNQFRGPPAVGKAIKDNLPQTEMIESSSVAGPGFVNVVLSTDWMAKCIQNMLLDGIDTWSPKLPIKKAVVDFSSPNIAKEMHVG
HLRSTIIGDTIARMLEFSNVNVLRRNHVGDWGTQFGMLIEHLFEQFPNFEEVNEAAIGDLQAFYKASKQRFDADSEFKERAQKAVVRLQGGEQRYRDAWA
QICAISRMEFDSVYGRLKVELEEKGESFYNPFIPSVIEGLTKQGLVEESEGARVIFLEGFNIPLIVVKSDGGYNYASTDLTALWYRLNEEKAEWIIYVTD
VGQHQHFEMVFKAATIAGWLPTEPNKYPRTSHVGFGLVLGEDGKRFRTRSTEVVRLADLLDEAKNRSKKVLIERGKDKEWPAEELDQIAEAIGYGAVKYA
DLKNNRTTNYTFSYEQMLNDKGNTAVYLLYAHARICSIIRRSARDIEELKHTGILSLVEKDERVLGLHLLRFSEIVEEACTNLLPSVLCEYLYNLSENFS
KFYNNCQVVGSAQETSRLLLCEATAIVMRKCFFLLGITPVYRI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G26300 EMB1027 embryo defective 1027, Arginyl... Lus10012940
[exp]
0 1
AT4G29000 CPP Tesmin/TSO1-like CXC domain-co... Lus10009494
[exp]
10.2 0.8508
AT4G23750 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytoki... Lus10033938
[exp]
10.5 0.8226
AT4G29000 CPP Tesmin/TSO1-like CXC domain-co... Lus10011693
[exp]
10.9 0.8311
AT1G17210 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, ... Lus10038518
[exp]
11.0 0.8273
AT3G55610 P5CS2 delta 1-pyrroline-5-carboxylat... Lus10030158
[exp]
19.7 0.7992
AT4G09730 RH39 RH39 (.1) Lus10017781
[exp]
24.5 0.8326
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Lus10022136
[exp]
26.7 0.8360
AT1G79560 EMB36, EMB156, ... EMBRYO DEFECTIVE 36, EMBRYO DE... Lus10031745
[exp]
30.4 0.8196
AT3G10690 GYRA DNA GYRASE A (.1) Lus10028879
[exp]
31.2 0.8324
AT1G10840 TIF3H1 translation initiation factor ... Lus10007054
[exp]
33.5 0.7681

Lus10012940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.