Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19730 592 / 0 Pectin lyase-like superfamily protein (.1) AT2G36710 308 / 3e-102 Pectin lyase-like superfamily protein (.1) AT5G47500 302 / 2e-100 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT1G05310 299 / 8e-99 Pectin lyase-like superfamily protein (.1) AT2G36700 281 / 7e-93 Pectin lyase-like superfamily protein (.1) AT5G55590 272 / 2e-88 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT2G21610 266 / 1e-86 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT3G29090 265 / 1e-86 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT5G07430 256 / 1e-82 Pectin lyase-like superfamily protein (.1) AT1G69940 251 / 8e-81 ATPPME1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011132 [exp] 591 / 0 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 575 / 0 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 431 / 7e-152 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 432 / 2e-151 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 316 / 5e-106 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 314 / 5e-105 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 303 / 6e-100 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 291 / 3e-95 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10026347 [exp] 278 / 2e-91 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068400 [exp] 624 / 0 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 466 / 8e-165 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 324 / 5e-109 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 313 / 1e-104 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 302 / 5e-100 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 301 / 2e-99 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 275 / 1e-90 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.004G156300 [exp] 276 / 2e-90 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.006G137100 [exp] 275 / 1e-89 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 271 / 2e-88 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10012942 pacid=23158521 polypeptide=Lus10012942 locus=Lus10012942.g ID=Lus10012942.BGIv1.0 annot-version=v1.0 ATGCCAACCTCTCATTCCATTTCCCACCTCATCATCATATTCCTCCTATTGCTTCTTCTCAATTCAACCCCAACAGCATTCTCCCACACTAAAGGACTTA AGCTCCGGAAATCATCAAAACAACTCCCGACTGTAAATTTCACAAGAACCCATTTCTCAGAACAGCAATTCATGAAGTGGGTCGATTTCGTTGGCAGCTT AAAGCATTCGGTCTTCAAAGTAGCCAAAAACAAGCTCTTCCCTTCTTTTACCCTCACCGTCGACAAGAACCCTGTCGTCGGCGACTTCACCTCCATTCAG GAAGCCGTTGACTCCCTCCCTTTCATCAATCTTGTCAGAGTACTGATCAAGGTCCATGCAGGAGTTTACACGGAGAAAGTAAGTATACCACAATTGAAAT CATTCATAACGATAGAAGGAGAAGGAGCTGACAAGACAATAGTACAATGGGGGGACACAGCTCAGACCCCTGGCCCTAAGGGTCAGCCAATGGGCACCTA CGCTTCCGCCACGTTTGCGGTCAACTCCCCGTTTTTCATAGCCAGAAACATCACTTTCAAGAACACCACGCCCCTTCCGGCGCCGGGAGCCGCCGGGAAG CAGGCGGTGGCGTTCAGGATATCGGCGGATAACGCGGCGTTTATAGGGTGTAGGTTCCTGGGCGCGCAAGACACTCTGTATGATCAGCTGGGGAGACACT ACTATAAAGACTGTTACATCGAAGGATCCGTGGATTTCATTTTTGGTAACGGCTTATCCTTGTTCGAGGGGTGCGAGGCGCATGCAATAGCTCGGAATGC GGGAGCAGTAACGGCACAGGGGAGGAACAGTATGTTGCAGGACACGGGGTTCTCATTCGTGAACTGTAAGGTCACGGGTTCAGGGGCTCTTTACCTTGGT AGAGCTTGGGGTCCTTTCTCCAGAGTTGTCTTTGCATACACTTACATGGACAACATCATCCTTCCCAAAGGCTGGTATAACTGGGGCGACCCTTCCCGTG AATTGACTGTATACTATGGGCAATATAAGTGCACAGGACCAGGTGCTAGTTTTGCAGGAAGGGTGGCTTGGTCAAGAGAACTTACTGATCAAGAAGCTCA ACCTTTTCTTTCTCTCAACTTCATTGATGGCTCTGAATGGATCAAATTCTAG
AA sequence Show only first row Show all	>Lus10012942 pacid=23158521 polypeptide=Lus10012942 locus=Lus10012942.g ID=Lus10012942.BGIv1.0 annot-version=v1.0 MPTSHSISHLIIIFLLLLLLNSTPTAFSHTKGLKLRKSSKQLPTVNFTRTHFSEQQFMKWVDFVGSLKHSVFKVAKNKLFPSFTLTVDKNPVVGDFTSIQ EAVDSLPFINLVRVLIKVHAGVYTEKVSIPQLKSFITIEGEGADKTIVQWGDTAQTPGPKGQPMGTYASATFAVNSPFFIARNITFKNTTPLPAPGAAGK QAVAFRISADNAAFIGCRFLGAQDTLYDQLGRHYYKDCYIEGSVDFIFGNGLSLFEGCEAHAIARNAGAVTAQGRNSMLQDTGFSFVNCKVTGSGALYLG RAWGPFSRVVFAYTYMDNIILPKGWYNWGDPSRELTVYYGQYKCTGPGASFAGRVAWSRELTDQEAQPFLSLNFIDGSEWIKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	0	1
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	2.2	0.9462
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	3.9	0.9345
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	4.5	0.9444
AT5G62680			Major facilitator superfamily ...		Lus10033106 [exp]	7.1	0.9222
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	8.1	0.9357
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	8.5	0.9349
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10021344 [exp]	9.4	0.8889
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	10.2	0.9279
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	10.2	0.9318
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10017002 [exp]	10.5	0.9157

Compare expression of checked genes

Lus10012942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.