Plant FIBer expression Database

Lus10012943 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001472
[exp]
79 / 1e-18 ND /
Lus10010379
[exp]
64 / 4e-12 ND /
Lus10019054
[exp]
63 / 9e-12 AT5G56670 48 / 1e-07 Ribosomal protein S30 family protein (.1)
Lus10002600
[exp]
64 / 1e-11 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1)
Lus10011700
[exp]
54 / 4e-09 ND /
Lus10014485
[exp]
52 / 3e-08 ND /
Lus10037807
[exp]
49 / 7e-07 ND /
Lus10020920
[exp]
45 / 1e-05 ND /
Lus10032779
[exp]
44 / 1e-05 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10012943 pacid=23158535 polypeptide=Lus10012943 locus=Lus10012943.g ID=Lus10012943.BGIv1.0 annot-version=v1.0
ATGATCGCCTTGCTGGAGATCCCATGGAAGTACTTCCATATGTTGTACTATGCACCCAGGAAGCAAACACATGACGGCTTGATACCGTTAGAAGGAGAAG
CTGACATTCCCGCTTTCAATCTGGTGGCCGATGAGGATTTATTGATAAATGTTTATCTCAGGGAGTTAACTGAGGAACATGCGACCTTAAGGATGAAGAA
GATAGAGCCGGACTTATGGTGCACTGCACTCCCGCTCCATCCTCCAGGTGTGGTCCTACAAGAGATTGATTGTGTAGAAGAAAAGTCATGCTCCACTGAG
CCAGGGGCATCATTAAGTATCTTGGGAATAGGGTCGAACCAGCCAAAGGTTCACTGTTTGGAATGGAAGAAGGACAACCCTAGCGCCACGAAGTTGATGT
CTAGAACCCTAGCACCGCTGGAGCCACCGAAGCTGATGTCTAGAACCCTAGCATCGTCGGAGCTACTATCCAAAACCCTAGTGAACCCTAGCACCACCGA
AGCTGATGTCCAGAACCCTAACACCATCGAAGTTGATGTCGAGACCCCTGTTGTTGATGTTCGTACCCCTGTTGCCATCAGAGCTGCTGTCCAATCTGAC
CTGCGAGATCTTGCTGAGGCAGAAGCTAAGCAGATATGGAACGAGTTGCTAGATGAATACCACCACGAATTGGCTGCTGAACAAGCTGAGTGGTAG
AA sequence
>Lus10012943 pacid=23158535 polypeptide=Lus10012943 locus=Lus10012943.g ID=Lus10012943.BGIv1.0 annot-version=v1.0
MIALLEIPWKYFHMLYYAPRKQTHDGLIPLEGEADIPAFNLVADEDLLINVYLRELTEEHATLRMKKIEPDLWCTALPLHPPGVVLQEIDCVEEKSCSTE
PGASLSILGIGSNQPKVHCLEWKKDNPSATKLMSRTLAPLEPPKLMSRTLASSELLSKTLVNPSTTEADVQNPNTIEVDVETPVVDVRTPVAIRAAVQSD
LRDLAEAEAKQIWNELLDEYHHELAAEQAEW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10012943
[exp]
0 1
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Lus10006669
[exp]
2.8 0.8695
AT1G52820 2-oxoglutarate (2OG) and Fe(II... Lus10013130
[exp]
4.5 0.8567
AT1G49320 ATUSPL1 unknown seed protein like 1 (.... Lus10026333
[exp]
6.5 0.8340
Lus10017698
[exp]
6.7 0.8196
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Lus10013916
[exp]
6.9 0.8199
AT3G12720 MYB ATMYB67, AtY53 myb domain protein 67 (.1) Lus10038395
[exp]
9.7 0.7604
AT2G46760 D-arabinono-1,4-lactone oxidas... Lus10010105
[exp]
12.4 0.7516
Lus10002344
[exp]
13.0 0.7918
AT4G34190 SEP1 stress enhanced protein 1 (.1) Lus10002818
[exp]
13.6 0.7502
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Lus10007013
[exp]
15.1 0.7799

Lus10012943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.