Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29140 619 / 0 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G19700 587 / 0 MATE efflux family protein (.1) AT1G58340 479 / 5e-165 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT5G52050 463 / 2e-159 MATE efflux family protein (.1) AT4G23030 457 / 3e-157 MATE efflux family protein (.1) AT2G38510 439 / 3e-150 MATE efflux family protein (.1) AT1G71870 417 / 2e-141 MATE efflux family protein (.1) AT5G49130 387 / 2e-129 MATE efflux family protein (.1) AT4G22790 267 / 4e-83 MATE efflux family protein (.1) AT1G15150 245 / 5e-75 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007231 [exp] 517 / 1e-179 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10017836 [exp] 510 / 1e-177 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 511 / 2e-177 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10028230 [exp] 446 / 3e-152 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 401 / 2e-134 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 380 / 5e-127 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 347 / 3e-115 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 261 / 1e-80 AT4G22790 549 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 244 / 4e-71 AT1G15170 537 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133500 [exp] 519 / 1e-180 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 514 / 1e-178 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 502 / 8e-174 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.003G121400 [exp] 499 / 4e-173 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 431 / 2e-146 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 428 / 5e-145 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 422 / 2e-143 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 418 / 9e-142 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 400 / 5e-135 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.003G116700 [exp] 260 / 2e-80 AT4G22790 441 / 2e-151 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10012944 pacid=23158539 polypeptide=Lus10012944 locus=Lus10012944.g ID=Lus10012944.BGIv1.0 annot-version=v1.0 ATGTGTAATCCAAACGCCACTCCCACCTCCATCACCACCACCACCACTTCCGCCGCCGCTAAACCTGCACAATCGCCGCTCATTCCCGACAACCACCACC ACCACAGCCCCCTTTACTACCTCCATCTTCTCTCTCCGCCAACCAATAATTCAAAACTTCCATCCCAAACCTCTCCTCCTTCTTTCTCGGATGTAATCTC AGAGACCAAATCCTTATTCAACCTCGCTTTCCCCATCGCACTCACTGCTCTCATTCTCTATTCCCGCTCCATCCTCTCCATGGTCTTTTTAGGCCACCTC GGCGACTTAGAACTCGCCGCCGGTTCCCTTGCAATCGCCTTCGCTAACATCACAGGCTACTCTGTTCTCTCCGGTCTTTCCTTAGGCATGGAGCCACTTT GTTCTCAGGCTTTCGGTGCTCAACGTCCAAAACTCCTCTCCTTCACTCTCCATCGCTCCGTGATTTTCCACCTCTTTTGTTCCTTACCGATTTCCTTCCT CTGGATTAACGTCTCCACTATCCTAATCTTTCTAGGTCAAGATCCTAAACTCGCCGATTTAGCTCACACTTACCTCCTCTGTTCCTTACCTGAACTCATC ACCAGTTCATTCATCCATCCCATCCGCATTTACCTTCGCGCCCAAGGAATCACTCATCCTCTAACACTCTCCTCTCTCTCCGCCGCAATCCTCCATTTGC CTCTCAATTTCCTTCTCGTCAATCGGTTTAATCTTGGCGTGGCCGGAGTCGCGGCGGCTTCCGTGGCATCTAATTGCATATTCCTTCTGTTTCTGGTATT CTACGTTTGTGCTTTTTCCCCTATCTATACGAAGCCGAATTTAATCGACTGTTTCTCCGATTGGAAGCCCCTGATACGGCTGGCGGGGCCGAGCTGCGTC TCCGTTTGTTTGGAATGGTGGTGGTATGAGATCATGATTTTAATGTGCGGACTATTGCCGGAGCCACGAGCGACGGTGGCGTCGATGGGGATCCTAATCC AAACGACGTCGTTGATATACGTGTTCCCGAGCTCGCTAGGGTTCGCGGTGTCTGCTCGGGTCGGGAACGAGCTCGGAGCGGGCAGGCCGAACGGGGCGAA GGTATCGGCCGAGGTGGCGGTGATTATGGCGTCCGTGATGGGTCTAACGGCATCGACGTTCGCATCGGGAATGAGAAGGCGGTGGGGCCGGATGTTCACG AGTGACGCGGAGATCTTACGGCTGACATCGCTGGCCTTGCCCATCCTGGGGCTATGCGAGCTTGGCAACTGCCCGCAGACGGTAGGGTGTGGGGTCCTGC GGGGTAGCGCCCGCCCTTCCAACGCGGCCAACGTGAACCTTGGCGCCTTCTATTTAGTGGGCCTTCCAGTTGCTGTCGGGCTTGCCTTCTGGTCCGGCGT TGGTTTTTGCGGGCTTTGGATTGGACTGCTCTCGGCCCAGATCTGCTGCGCCGGTCTCATGCTCTACGTCGTCGGGAACACCGATTGGGTCGTCCAAGCA AGGAGAGCTGAAATGCTGACGTCCGCCGGGGAAAACGTTAGTGATAATTGTGATGATGATGATGCACAGCCATTAATTATTACCCAAGTGTAG
AA sequence Show only first row Show all	>Lus10012944 pacid=23158539 polypeptide=Lus10012944 locus=Lus10012944.g ID=Lus10012944.BGIv1.0 annot-version=v1.0 MCNPNATPTSITTTTTSAAAKPAQSPLIPDNHHHHSPLYYLHLLSPPTNNSKLPSQTSPPSFSDVISETKSLFNLAFPIALTALILYSRSILSMVFLGHL GDLELAAGSLAIAFANITGYSVLSGLSLGMEPLCSQAFGAQRPKLLSFTLHRSVIFHLFCSLPISFLWINVSTILIFLGQDPKLADLAHTYLLCSLPELI TSSFIHPIRIYLRAQGITHPLTLSSLSAAILHLPLNFLLVNRFNLGVAGVAAASVASNCIFLLFLVFYVCAFSPIYTKPNLIDCFSDWKPLIRLAGPSCV SVCLEWWWYEIMILMCGLLPEPRATVASMGILIQTTSLIYVFPSSLGFAVSARVGNELGAGRPNGAKVSAEVAVIMASVMGLTASTFASGMRRRWGRMFT SDAEILRLTSLALPILGLCELGNCPQTVGCGVLRGSARPSNAANVNLGAFYLVGLPVAVGLAFWSGVGFCGLWIGLLSAQICCAGLMLYVVGNTDWVVQA RRAEMLTSAGENVSDNCDDDDAQPLIITQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29140		ADS1	ACTIVATED DISEASE SUSCEPTIBILI...		Lus10012944 [exp]	0	1
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	2.8	0.9306
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027971 [exp]	6.4	0.8709
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	7.7	0.9158
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	8.2	0.9304
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	10.1	0.9156
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	10.4	0.9212
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10036846 [exp]	11.3	0.8799
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	12.6	0.9066
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	15.0	0.9008
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10009555 [exp]	17.4	0.8176

Compare expression of checked genes

Lus10012944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.