Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012945 pacid=23158556 polypeptide=Lus10012945 locus=Lus10012945.g ID=Lus10012945.BGIv1.0 annot-version=v1.0 ATGGCGCCTCAGCCGAAGAGACGAAGGATCAACCAGCCTCTCAAGGTTGAATCCGCTTCCGGGTCCAAGAATCCAAAAGACGAAGCAGCAATCAGAAGCG GTTTGAAAGATGCGGAAACAGGGAGCAGTAGCAGTAACAAGAATGTGAGGTCAGTGGATCCGTGGATAGAACAGTCTAAGAATTTTGCAGTGGCTGAAGC TCAGAAAGACGGATGCACTGGAAACTATAAAATCTTGGATTCCCCATTTGGGAACTTCCTTCTCCCCGTCGTCCCAACTCGTGCTGACTTGTGTCCCAAC TCTTAG
AA sequence Show only first row Show all	>Lus10012945 pacid=23158556 polypeptide=Lus10012945 locus=Lus10012945.g ID=Lus10012945.BGIv1.0 annot-version=v1.0 MAPQPKRRRINQPLKVESASGSKNPKDEAAIRSGLKDAETGSSSSNKNVRSVDPWIEQSKNFAVAEAQKDGCTGNYKILDSPFGNFLLPVVPTRADLCPN S

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012945 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	1.4	0.8921
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	4.7	0.8903
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020809 [exp]	5.5	0.8849
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	7.5	0.8843
AT5G19670			Exostosin family protein (.1)		Lus10011121 [exp]	9.5	0.8381
AT5G61970			signal recognition particle-re...		Lus10040614 [exp]	11.7	0.8277
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	11.8	0.8736
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	12.7	0.8772
AT3G52230			unknown protein		Lus10038643 [exp]	13.7	0.8561
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	16.0	0.8609

Compare expression of checked genes

Lus10012945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.