Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19860 658 / 0 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT4G29130 658 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT1G50460 429 / 3e-146 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 405 / 3e-137 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT1G47840 392 / 6e-132 HXK3 hexokinase 3 (.1) AT4G37840 340 / 1e-111 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038287 [exp] 655 / 0 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 632 / 0 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 603 / 0 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10025815 [exp] 538 / 0 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10024336 [exp] 480 / 2e-166 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 474 / 3e-164 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10034980 [exp] 466 / 6e-163 AT2G19860 334 / 6e-113 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10005019 [exp] 434 / 3e-148 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 427 / 1e-145 AT1G50460 636 / 0.0 hexokinase-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088300 [exp] 665 / 0 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G190400 [exp] 658 / 0 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 480 / 2e-166 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.005G238600 [exp] 478 / 9e-166 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.009G050000 [exp] 464 / 3e-160 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.007G009300 [exp] 429 / 1e-146 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10012946 pacid=23158515 polypeptide=Lus10012946 locus=Lus10012946.g ID=Lus10012946.BGIv1.0 annot-version=v1.0 ATGAAGAAGGCGACCGTCGTAGCAGTAGTGGCCGGCGCCGCAGCGGTGTGTGCTGCGGCTACTGTAGTGGTCCACCGGAAAAGGCAGAAGAATCGCCGCC GGGAGAAGGTGAGGACAATCGTAGAAGCGCTTGAAGACAAGTGCGCAACGCCGGTGGAGAAGCTGCGGCAGCTGGCCGACGCTATGACCGCCGAGATGTA CGCCGGCCTTCGGCCGCACAGTGTTAGCAAGCTCAAGATGCTTATTAGCTACGTTGACAATCTGCCTACCGGAGATGAGAAAGGGTTGTTCTACGCGTTG GATCTTGGTGGTACAAATTTCCGGGTGATGAGGGTGGTGTTAGGCGGACAAGAAGAACGTGTAGTCAAACAAGAATCAGTTGAAGTCTCTATTCCTCCAC AAGTCATGACTGGAACTTCAGATGGACTGTTCGATTTCATTGCTCAAGCTCTGAAGAAATTTGTCGAAACGGAAGGCGAAGATTTGAAGCCTTCTCCTGG AAGACTGAGGGAATTGGGTTTCACCTTCTCATTTCCAGTCAGTCAGATGTCCATTTCGTCAGGCCATCTTATGAACTGGACAAAAGGGTTCTCCATCGAT GACGCTGTTGGACAAGATGTCGTGGCAGAACTCACAAAAGCAATGAAAAGAGTCGATCTTGACATGCGAGTGGCAGCATTGATCAATGACACAATCGGAA CATTAGCTGGAGGAAGATACAATAACCGGGATGTCATTGCAGCTGTGATCTTGGGTACTGGAACAAATGCAGCATATGTTGAGCGAGCAGATACCATTCC AAAGTGGCAAGGTCCACTGCCAAAGTCTGGAGAAATGGTGATCAATATGGAATGGGGTGATTTCCAGTCCTCACACCTTCCATTGACAGAATATGATAAG GCACTGGATATTGAGTCGTTGAATCCTGGAGATCAGATTTTTGAGAAGGTGATCTCTGGTATGTATTTAGGAGAAATCTTGCGAAGAGTTCTACTAAAGA TGGCTGAAGAAGCAGCCATATTCGGCGATGTTGTCCCCCCCAAATTGAGGTCTCCGTTCGTATTGAGGACCCCGGTCATGTCAGCAATGCATCACGATAC ATCCTCGGATTTGAAAGTTGTCGAGAATAAACTAATGGAAGTCTTTGAGATATCAACCACTTGCTTAGAGACGAGACAAGTGATTGTTGAGGTGTGCGAC ATTATCGCAACCAGGGGGGCGAGGCTATCTGCTGCTGGGATATTCGGGATCCTGAAGAAAGTTGGAAGAGACAGAGTTTCTGAGGGCGGGGATGAGGAGA GATCGGTGATAGCGTTAGATGGAGGGTTGTTTGAGCACTACAGCAAGTTTAGAGAGTGTTTGAAGAGCACCCTAAGGGAGCTGTTGGGAGAGGAAGTTTC TGAAAAGGTGAGTGTAGAGCTCTCGAATGATGGCTCCGGCATCGGTGCAGCACTGTTGGCTGCGTCTCACTCGCAATACTTAAGAGGAGAGGTTGTAGAA GAGCTTTGA
AA sequence Show only first row Show all	>Lus10012946 pacid=23158515 polypeptide=Lus10012946 locus=Lus10012946.g ID=Lus10012946.BGIv1.0 annot-version=v1.0 MKKATVVAVVAGAAAVCAAATVVVHRKRQKNRRREKVRTIVEALEDKCATPVEKLRQLADAMTAEMYAGLRPHSVSKLKMLISYVDNLPTGDEKGLFYAL DLGGTNFRVMRVVLGGQEERVVKQESVEVSIPPQVMTGTSDGLFDFIAQALKKFVETEGEDLKPSPGRLRELGFTFSFPVSQMSISSGHLMNWTKGFSID DAVGQDVVAELTKAMKRVDLDMRVAALINDTIGTLAGGRYNNRDVIAAVILGTGTNAAYVERADTIPKWQGPLPKSGEMVINMEWGDFQSSHLPLTEYDK ALDIESLNPGDQIFEKVISGMYLGEILRRVLLKMAEEAAIFGDVVPPKLRSPFVLRTPVMSAMHHDTSSDLKVVENKLMEVFEISTTCLETRQVIVEVCD IIATRGARLSAAGIFGILKKVGRDRVSEGGDEERSVIALDGGLFEHYSKFRECLKSTLRELLGEEVSEKVSVELSNDGSGIGAALLAASHSQYLRGEVVE EL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	0	1
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	1.0	0.9872
AT5G59350			unknown protein		Lus10004955 [exp]	2.0	0.9814
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	3.5	0.9743
					Lus10002555 [exp]	4.0	0.9774
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	5.5	0.9775
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	6.7	0.9748
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004120 [exp]	6.7	0.9579
AT1G76600			unknown protein		Lus10033761 [exp]	7.9	0.9738
					Lus10018894 [exp]	8.9	0.9696
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Lus10005467 [exp]	11.2	0.9521

Compare expression of checked genes

Lus10012946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.