Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58360 62 / 6e-12 TRAF-like family protein (.1) AT3G58250 61 / 3e-11 TRAF-like family protein (.1) AT5G06600 61 / 4e-11 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT2G05420 58 / 3e-10 TRAF-like family protein (.1) AT3G11910 58 / 3e-10 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G27040 56 / 2e-09 Meprin and TRAF (MATH) homology domain-containing protein (.1) AT3G58270 55 / 3e-09 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58200 54 / 8e-09 TRAF-like family protein (.1) AT3G58220 54 / 8e-09 TRAF-like family protein (.1.2) AT3G58350 53 / 1e-08 RTM3 RESTRICTED TEV MOVEMENT 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008233 [exp] 101 / 2e-25 ND / Lus10013547 [exp] 97 / 4e-25 AT3G44800 72 / 2e-14 Meprin and TRAF (MATH) homology domain-containing protein (.1) Lus10013548 [exp] 94 / 5e-23 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 90 / 4e-21 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10017291 [exp] 73 / 2e-15 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 71 / 2e-14 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10027030 [exp] 67 / 3e-13 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 66 / 3e-13 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 65 / 2e-12 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012600 [exp] 65 / 1e-12 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 64 / 4e-12 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 61 / 4e-11 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 61 / 4e-11 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.003G103200 [exp] 51 / 6e-08 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.001G130700 [exp] 51 / 6e-08 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.008G005300 [exp] 50 / 2e-07 AT3G17380 317 / 7e-108 TRAF-like family protein (.1) Potri.010G075000 [exp] 49 / 5e-07 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G163300 [exp] 48 / 1e-06 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.017G049100 [exp] 47 / 1e-06 AT3G17380 246 / 3e-80 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10012948 pacid=23158527 polypeptide=Lus10012948 locus=Lus10012948.g ID=Lus10012948.BGIv1.0 annot-version=v1.0 ATGGCGGATGAAGATGAGCATCAGGTCATGAGAAAGGATACCAAGAAATTCACATGGAGGATAGAGAATTTCTCAAAGTTGACGGAAACCAACGTTTATT CTGACACTTTCTTAGTTGGGGGCCACAGATGGAGAATTGTTGCTTACCCAAAGGGGAATAAAGTAGCTGAACTAAAAGAACTTTCTACTAAAGGATTTCT TGTTAATGATACCATCATGATTGAAGCTGAAGTTTCTCCAGAAGCTATAGCATCAGAAGCTGCTACAGATGAGGCTAAAGTAATCGAAGCCAATCCTGCT GAGGCTAATGAAAATACAAACAGTTCCTTCTCTGCATCAAGTGTGCAATTTACAATTCGCAGCCTAGTCGCCGAACTTTCAGTAATGAGTACTATTGATG GCAACACTTCTTCATCCGAAGGAAATGGGTTGACCTTGCTGCAACAGCTAAGGGACAAACTCGACATGTTCTTTGATATGTCACATGGGTTTCTATGTCA AACCAAATCATCGATGTAG
AA sequence Show only first row Show all	>Lus10012948 pacid=23158527 polypeptide=Lus10012948 locus=Lus10012948.g ID=Lus10012948.BGIv1.0 annot-version=v1.0 MADEDEHQVMRKDTKKFTWRIENFSKLTETNVYSDTFLVGGHRWRIVAYPKGNKVAELKELSTKGFLVNDTIMIEAEVSPEAIASEAATDEAKVIEANPA EANENTNSSFSASSVQFTIRSLVAELSVMSTIDGNTSSSEGNGLTLLQQLRDKLDMFFDMSHGFLCQTKSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	0	1
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	4.2	0.9453
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	5.8	0.9506
AT1G80170			Pectin lyase-like superfamily ...		Lus10026798 [exp]	6.7	0.9239
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	8.1	0.9385
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	10.4	0.9131
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	11.0	0.9314
AT4G04750			Major facilitator superfamily ...		Lus10000924 [exp]	12.2	0.9130
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036075 [exp]	12.6	0.8921
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	12.6	0.9416
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	13.0	0.9274

Compare expression of checked genes

Lus10012948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.