Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 839 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G28440 569 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 557 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 527 / 1e-171 HSL2 HAESA-like 2 (.1) AT5G65700 478 / 7e-153 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 470 / 3e-150 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 470 / 1e-149 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 446 / 3e-141 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20270 446 / 6e-141 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 427 / 5e-134 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034978 [exp] 1606 / 0 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10006028 [exp] 868 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 855 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10018636 [exp] 555 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 505 / 2e-163 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 500 / 1e-161 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009476 [exp] 488 / 8e-157 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 490 / 1e-156 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 478 / 4e-153 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088200 [exp] 984 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088100 [exp] 974 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 966 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235800 [exp] 905 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 892 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088074 [exp] 741 / 0 AT5G25930 739 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235500 [exp] 611 / 0 AT5G25930 744 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 576 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 567 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 537 / 1e-175 AT1G28440 1130 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012949 pacid=23158530 polypeptide=Lus10012949 locus=Lus10012949.g ID=Lus10012949.BGIv1.0 annot-version=v1.0 ATGTCTATGCTCACCGTGTTAGTTACTCTTTTCTTCTTCTTCGTCTTCTTCTTCTGCCATGGAAGCTCTCAGTTGCTTCAGGACGACCGTGGAATCCTGC TGAGAATGAAGCAACACTGGCAGAACCCACTGTCACTCTCTCACTGGTCACCGGACTCATCTCCCTGCGACTGGCCGGAAGTTAACTGCTCGGGAAACTC TGTTACGGCGACTCTGTCACGCATCGTTGGAGCGTTCCCAACAGTTTTATACAATTGCTCCAATCTTGAGTACTTAAACCTTGGCCAAAACTACTTCGTT GGTCCGATTCCCGGTGATGTTGATCGTTTGGGTCGACTGAATCACCTTGATGTCTCTGGTAATAACTTCTCCAGTGACATCCCATCTGCCATTGGGAGGT TGAAGGAGTTGAAGGTTCTTTACCTTGACCAAAATCAGTTCAATGGAACTTTCCCGCAGGAAATTGGCTCATTATCTAAATTAGAAGAGTTGAAATTGGC CCACAATGAGTTTGTGCCTTCGTTGCTGCATTCCAACTTTACCCAGCTGAAGAATCTCAAGGTTTTGTGGGTTAACGATGCGAATCTGATTGGGGAGATA CCGGAAATGATCGGAGAGATGGAAGCATTGGAGAATGTCGATTTATCGACGAATAACCTCCATGGGAGTATCCCAGCTGGATTGTTTAAGTTGAAGAAGT TGAATTTCGTTTATTTGTACAAGAACAGGTTATCCGGAGAGATTCCACGAGTTGTGGAGGCTCTGGAATTGACTGACGTGGATCTTTCAGACAACAGTTT GAGTGGTACGATTCCTGATGACTTCGGGAAGCTAGAGAAAGCTCAGATCTTGAATCTCTTCTACAACAATTTAAGCGGCGAAATACCAGAAAGCATTAGC CGGCTTCCACAACTGATTGAATTCAGTGTGTTCACCAATAATTTATCAGGTCCTATTCCTGCAGATTTTGGAAGATACTCAATGCTCGAGGTTTTCCAGG TCGACTCCAATCGGCTCTATGGCGAACTTCCTGAACATCTGTGTAGCAACGGAAAGTTGGACGGAGTTGCAGCATATGATAACTTCCTCAGTGGAGAGAT ACCGAAATCGTTAGGAAATTGCAGCAGCGTGCGAATTATCCTCCTTTCGAACAACTCTTTCTCTGGAGAGGTTCCTGCTGGTTTATGGACTGGATCTAAC TTGGAAACTTTGATCATCAGCGACAATTCGTTCACAGGTGAACTTCCCGACAACGTGGCATCGAATCTTTCTCGACTCGAAATTAGCAACAACAGGTTTA GTGGTACTCTCCCTAGTGGAATTGGTAACTGGACCAATCTGGTGTTCTTCTCTGCCAGTAACAACTCCATTTCAGGATCAATCCCTCCAGAAATAACAGC TCTTCCACTTCTTACGAATCTGCTTCTCGAAGGAAACCAACTCAACGGAGCCCTTCCATCCAGTATAATCTCTTGGCAGTCTTTATCCACTCTCATTCTC AGAAGAAACCAACTGTCTGGAAACATTCCTTCACAATTCGGTAACCTACCTCGCCTTTCGGAACTAGACTTATCAGAAAACCAATTGTCTGGAACCATTC CTCCACAAATCAGCAGCTTGCCGCTAACTGTCCTGAATGTCTCTTCAAATCGTCTGACCGGAAACATTCCTGGGCAATTCCAGAACGGTGCATTTGCTGA TAGCTTCTTGAACAATGCTGGCTTATGTTCAAGCAACTTCAATAGCTGCAGCAACAACCCAGGAGGACCTTCTTCTCGGAGCAAGGCTGATGCAACCCAC ATCTTGGCATTGGTATTAAGTGTTTCAGCTGTGGTATTTGTGGTGGCTGTGATATCATCATTTCTCGTCATCAGGAAACTCAAGAATAAGAGAGTCAAGG ATCCTGCATGGGAGTTCACCTCATTTCAGAAGCTCAACTTTACTGAAGAGAAGATTCTTGCAGGGTTAACAGAAAGCAATGTGATTGGAATGGGCGGATC GGGGAAAGTGTATCGCGTTTCTGTGAACAGTACTCCAAATGCTGCAGTTGCTGTGAAGAGAATCTGGAACCACAAGGAATCAGATGATGAGAAGGAGTTC CTGGCAGAAGTCCAAACCTTGAGTGGAATCAGGCACTCCAACATAGTGAAGCTGCTATGTTGCATCTCAAATAATGGCGATTCGAAACTGCTGGTGTACG AGTACCTTGAGAATCGCAGCCTGGATTTGTGGCTGCATTCCAGCAATATGAGCCTATCGGAGTCGAGCAAGCTGGTGGGTTTGGACTGGCCGAAACGTCT GAACATTGCTATAGGATCTGCAGAAGGTCTATGCTATATGCACCACGATTGTGTACCTCCCGTCATTCACAGAGATGTGAAATCCAGCAATATCCTCCTC GACTCTCAATTCAACGCAAAGATCGCTGATTTTGGCTTAGCCAGGATGCTGAACAGACTCGGTGAAGATGCTACACTGTCCATGGTTGCTGGCTCCTTCG GCTACATGGCTCCAGAATACGGTAACAGTGGAAGGGTAAATGAGAAAGTTGATGTGTATAGCTTTGGAGTGGTGCTGCTAGAGCTGACGACAGGGAGAGA TGCCAGCAACGGGGGAAAGAAGAACATAACAAGCTTAGTGGAATGGGCATGGCGGCACGTCCAGAAAGGGAAGGCCATAGGTGATGCATTGGACGAGGAG GTTAAGGAAGGTATTTTCATGGAGGAGATGGTGTGTGTTTTCAAGCTTGGGATTCTATGCACCAGTAAACTCGCATGTAGCCGGCCATCGATGAAGGAGG TTGTGCAAATATTGGAGAGATGTCGGCGGGAAGGGAGTTGGAGAAGGAAGAGTAGCAATGGAGGGAGGAGGGTGGATGAGAGCCCTTTGCTCAGGAACTC AGATGATATCGACTGTAGTAGCTTGCCAGTGTGA
AA sequence Show only first row Show all	>Lus10012949 pacid=23158530 polypeptide=Lus10012949 locus=Lus10012949.g ID=Lus10012949.BGIv1.0 annot-version=v1.0 MSMLTVLVTLFFFFVFFFCHGSSQLLQDDRGILLRMKQHWQNPLSLSHWSPDSSPCDWPEVNCSGNSVTATLSRIVGAFPTVLYNCSNLEYLNLGQNYFV GPIPGDVDRLGRLNHLDVSGNNFSSDIPSAIGRLKELKVLYLDQNQFNGTFPQEIGSLSKLEELKLAHNEFVPSLLHSNFTQLKNLKVLWVNDANLIGEI PEMIGEMEALENVDLSTNNLHGSIPAGLFKLKKLNFVYLYKNRLSGEIPRVVEALELTDVDLSDNSLSGTIPDDFGKLEKAQILNLFYNNLSGEIPESIS RLPQLIEFSVFTNNLSGPIPADFGRYSMLEVFQVDSNRLYGELPEHLCSNGKLDGVAAYDNFLSGEIPKSLGNCSSVRIILLSNNSFSGEVPAGLWTGSN LETLIISDNSFTGELPDNVASNLSRLEISNNRFSGTLPSGIGNWTNLVFFSASNNSISGSIPPEITALPLLTNLLLEGNQLNGALPSSIISWQSLSTLIL RRNQLSGNIPSQFGNLPRLSELDLSENQLSGTIPPQISSLPLTVLNVSSNRLTGNIPGQFQNGAFADSFLNNAGLCSSNFNSCSNNPGGPSSRSKADATH ILALVLSVSAVVFVVAVISSFLVIRKLKNKRVKDPAWEFTSFQKLNFTEEKILAGLTESNVIGMGGSGKVYRVSVNSTPNAAVAVKRIWNHKESDDEKEF LAEVQTLSGIRHSNIVKLLCCISNNGDSKLLVYEYLENRSLDLWLHSSNMSLSESSKLVGLDWPKRLNIAIGSAEGLCYMHHDCVPPVIHRDVKSSNILL DSQFNAKIADFGLARMLNRLGEDATLSMVAGSFGYMAPEYGNSGRVNEKVDVYSFGVVLLELTTGRDASNGGKKNITSLVEWAWRHVQKGKAIGDALDEE VKEGIFMEEMVCVFKLGILCTSKLACSRPSMKEVVQILERCRREGSWRRKSSNGGRRVDESPLLRNSDDIDCSSLPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25930			Protein kinase family protein ...		Lus10012949 [exp]	0	1
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	4.9	0.8598
AT3G25610			ATPase E1-E2 type family prote...		Lus10019152 [exp]	6.2	0.8833
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	9.5	0.8586
AT3G19615			unknown protein		Lus10042265 [exp]	10.9	0.8911
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	10.9	0.8535
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	13.3	0.8899
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10025741 [exp]	30.6	0.8623
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	30.9	0.8128
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10004387 [exp]	35.1	0.8546
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	35.8	0.8505

Compare expression of checked genes

Lus10012949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.