Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29120 394 / 1e-138 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 212 / 3e-67 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 199 / 3e-62 6-phosphogluconate dehydrogenase family protein (.1) AT1G17650 108 / 2e-27 GR2, GLYR2 glyoxylate reductase 2 (.1) AT3G25530 100 / 1e-24 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT4G20930 77 / 6e-16 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 67 / 2e-12 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001349 [exp] 244 / 8e-80 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10034977 [exp] 238 / 9e-80 AT4G29120 232 / 2e-77 6-phosphogluconate dehydrogenase family protein (.1) Lus10034974 [exp] 183 / 6e-58 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1) Lus10015455 [exp] 157 / 2e-45 AT1G71180 243 / 2e-78 6-phosphogluconate dehydrogenase family protein (.1) Lus10034975 [exp] 114 / 3e-32 AT4G29120 132 / 1e-39 6-phosphogluconate dehydrogenase family protein (.1) Lus10037629 [exp] 110 / 5e-28 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 109 / 1e-26 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10012301 [exp] 87 / 9e-20 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10016077 [exp] 81 / 1e-16 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088000 [exp] 435 / 1e-154 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G211500 [exp] 258 / 3e-85 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 113 / 8e-29 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.014G197900 [exp] 101 / 4e-25 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G465600 [exp] 85 / 1e-18 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 64 / 2e-11 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10012950 pacid=23158557 polypeptide=Lus10012950 locus=Lus10012950.g ID=Lus10012950.BGIv1.0 annot-version=v1.0 ATGGGGCGATCCATGTGTTCCCACCTCATCAAAGCCGGCTACCCTCTCACCGTCTTCACCCGCACCGTCTCCAAGGCCCAACCCCTCCTCGACATCGGCG CCAAACTCGCCGATTCCCCACTCGCCGTCGCTTCCCAATCCGACGTCGTCTTCTCCACCGTCGGCTTCCCCTCCGACGTCCGCCAGGTACTGCTCCACCC CACCTCCGGCGCCCTCCAGGGCCTCAATCCGGGCGGGATTCTTGTCGACATGACCACATCGGAACCCTCCCTCGCCGCCGAGATCTCTGAGGCCGCATCG GCAAAAAAATGCCACTCGATCGACGCGCCTGTCTCGGGCGGCGATCGCGGCGCGAAGAGCGGGACCCTGGCGATATTCGCCGGCGGGGATAGATCCGTGG TGGAGAGGCTAAATCCTTTGTTTGCCCTCATGGGCAAGGTTAATTACATGGGTGCCCCTGGGAAGGGCCAATTCGCTAAACTGGCGAATCAGATCACCAT AGCTTCGGCGATGGTTGGGTTGGTGGAAGGGATGATATATGCTTACAAGGCTGGACTGAACGTGGAAGTTTACTTGACCGCAATCTCTACAGGAGCCGCT GGGTCCAAGTCACTGGATTTGTACGCTGGTAGGATTATGGAGAGGGATTTCCAACCTGGGTTTTATGTGAATCATTTTGTCAAGGATTTAGGCATCTGTT TGAAAGAGTGCCAGAATATGGGCCTTGCTTTGCCTGGTTTGGCTTTGGCTCAGCAGCTTTATCTGTCGCTAAAGGCTCATGGGGAAGGCAATTTGGGAAC CCAGGCTTTGATTTTGGCTCTCGAGAGGCTTAACAATGTTTCCTTGGCCAACCCGAAAAAATGA
AA sequence Show only first row Show all	>Lus10012950 pacid=23158557 polypeptide=Lus10012950 locus=Lus10012950.g ID=Lus10012950.BGIv1.0 annot-version=v1.0 MGRSMCSHLIKAGYPLTVFTRTVSKAQPLLDIGAKLADSPLAVASQSDVVFSTVGFPSDVRQVLLHPTSGALQGLNPGGILVDMTTSEPSLAAEISEAAS AKKCHSIDAPVSGGDRGAKSGTLAIFAGGDRSVVERLNPLFALMGKVNYMGAPGKGQFAKLANQITIASAMVGLVEGMIYAYKAGLNVEVYLTAISTGAA GSKSLDLYAGRIMERDFQPGFYVNHFVKDLGICLKECQNMGLALPGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVSLANPKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29120			6-phosphogluconate dehydrogena...		Lus10012950 [exp]	0	1
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10019847 [exp]	1.4	0.8790
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10034363 [exp]	6.3	0.8761
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	6.8	0.8776
AT2G25250			unknown protein		Lus10041025 [exp]	10.0	0.8752
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	11.2	0.8702
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	11.7	0.8691
AT4G32020			unknown protein		Lus10005344 [exp]	12.2	0.8773
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10020913 [exp]	14.3	0.8559
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	14.5	0.8635
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	14.8	0.8642

Compare expression of checked genes

Lus10012950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.