Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51070 206 / 2e-61 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G50920 194 / 3e-57 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 189 / 3e-55 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT1G74310 182 / 5e-53 HOT1, ATHSP101 heat shock protein 101 (.1) AT2G25140 172 / 3e-49 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 167 / 1e-47 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038272 [exp] 194 / 2e-59 AT2G19740 200 / 9e-63 Ribosomal protein L31e family protein (.1) Lus10043013 [exp] 200 / 4e-59 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032514 [exp] 198 / 3e-58 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10016723 [exp] 195 / 2e-57 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 192 / 3e-57 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 192 / 2e-56 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10040527 [exp] 184 / 3e-55 AT1G74310 906 / 0.0 heat shock protein 101 (.1) Lus10021159 [exp] 184 / 7e-54 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040528 [exp] 184 / 1e-53 AT1G74310 1496 / 0.0 heat shock protein 101 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105900 [exp] 198 / 1e-58 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 197 / 3e-58 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G110000 [exp] 194 / 4e-57 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.012G112000 [exp] 193 / 1e-56 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G057000 [exp] 189 / 2e-55 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 188 / 6e-55 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.005G197400 [exp] 179 / 2e-53 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.004G124800 [exp] 178 / 2e-51 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 173 / 1e-49 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.017G090600 [exp] 169 / 3e-48 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10012953 pacid=23158566 polypeptide=Lus10012953 locus=Lus10012953.g ID=Lus10012953.BGIv1.0 annot-version=v1.0 ATGATCGAGTATATGGAGAGGCACAGCGTATCCAAACTCTTCGGGTCTCCACCTGGCTACACAAGTTTCATAGAGGGCGGCCAATTGACGGAGGCAATCG CCCGGAAACCCAGCTCCGTCGTCCTTTTCGACGAAATCGAAAAGGCACACTGCGACGTGTGGAACACACTCCTCCAAATGTTCATGACGGACGGGGGTGA GAATAAATTCAATTTCAGAGACGCCATCATCATCATGACCTCGAACGTCTGCCAGACAGCCGTGATCGAGGGGATTCCTAACGGTGATGAAACAGCAACA AGGCATAAAGTTATGGAGGAGCTGAAGAAGGTGTTTAGACCGGAGTTTCTGAACAGAATTGATGACATTGTGATTTTCAAGGCGCTGTCGCAAGAGGAAT TAATGAAGATGGTTGAGATCATGGTTAGGAAGTTGGCGGAGAGGATGAAGTCGACCAAGGGGATTCAACTGGAAATCAGCGAGGCATTGAAGAAGAAAAT TGCGACCGAAGAGTACGATCCGTGCTACGGAGCCAGGCCATTGAAGAGGACGATGACGCGACTCCCATTGGCCGACGCAATTTTGGATGGTAGAGTTGGA GATGGCGGCTCTATTACTCTGTTGGCCATGTCGGCGCCGACGACGACGGTCACAAAAGGTCACAGTCCATGA
AA sequence Show only first row Show all	>Lus10012953 pacid=23158566 polypeptide=Lus10012953 locus=Lus10012953.g ID=Lus10012953.BGIv1.0 annot-version=v1.0 MIEYMERHSVSKLFGSPPGYTSFIEGGQLTEAIARKPSSVVLFDEIEKAHCDVWNTLLQMFMTDGGENKFNFRDAIIIMTSNVCQTAVIEGIPNGDETAT RHKVMEELKKVFRPEFLNRIDDIVIFKALSQEELMKMVEIMVRKLAERMKSTKGIQLEISEALKKKIATEEYDPCYGARPLKRTMTRLPLADAILDGRVG DGGSITLLAMSAPTTTVTKGHSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	0	1
					Lus10038978 [exp]	1.4	0.9501
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	1.7	0.9235
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	5.1	0.9274
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	5.9	0.8834
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10013316 [exp]	9.5	0.8604
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	11.0	0.8717
AT1G47710			Serine protease inhibitor (SER...		Lus10019009 [exp]	12.2	0.9059
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	13.4	0.8477
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	14.1	0.8611
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	16.6	0.8533

Compare expression of checked genes

Lus10012953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.