Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60660 121 / 1e-36 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT1G26340 84 / 8e-22 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G32720 76 / 9e-19 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 76 / 2e-18 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT5G53560 75 / 3e-18 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G37130 74 / 2e-16 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 72 / 7e-16 GNR1, NIA1 nitrate reductase 1 (.1) AT2G46650 66 / 5e-15 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT2G46210 57 / 9e-11 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT3G61580 56 / 3e-10 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034972 [exp] 136 / 2e-39 AT1G60660 87 / 1e-20 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Lus10008838 [exp] 80 / 5e-20 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 79 / 8e-20 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10000651 [exp] 76 / 9e-19 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10036973 [exp] 74 / 5e-18 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10011858 [exp] 72 / 4e-17 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 72 / 6e-17 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10035402 [exp] 74 / 1e-16 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10038977 [exp] 70 / 4e-15 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G087600 [exp] 136 / 1e-42 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Potri.001G314200 [exp] 80 / 3e-20 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 79 / 4e-20 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.017G054300 [exp] 79 / 5e-20 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G242500 [exp] 77 / 3e-19 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 74 / 5e-18 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.015G007600 [exp] 72 / 3e-17 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.005G172400 [exp] 69 / 8e-15 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 68 / 2e-14 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.014G019200 [exp] 64 / 3e-14 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10012954 pacid=23158561 polypeptide=Lus10012954 locus=Lus10012954.g ID=Lus10012954.BGIv1.0 annot-version=v1.0 ATGATTATAGCAGTTGTGTTGCTGATCTTGGGCGTTGTATTGGGAGCCATGTTTCTATTCCCTTTTAAATCTGCTGTCCCTGAAAAGGGTCGACCCAATG CCAGTAAAGTTAAGGCATTTAAAGTGTACAGCAAAGCTGAAATCTCCTTGCATAACAAAAGGACTGACTGTTGGATCATTGTAAAGGGCAGGGTGTTCGA TGTTACCTCGTACGTTGAAGAACATCCTGGTGGCGATGCTATTCTAACAAATGCTGGGGATGATTCAACCGAAGGATTTTATGGGCCGCAGCATCCTGGT GGAGCATTTCAGTTGATCGAGGACTACTGCATTGGGGAGCTAGAGAAGTAG
AA sequence Show only first row Show all	>Lus10012954 pacid=23158561 polypeptide=Lus10012954 locus=Lus10012954.g ID=Lus10012954.BGIv1.0 annot-version=v1.0 MIIAVVLLILGVVLGAMFLFPFKSAVPEKGRPNASKVKAFKVYSKAEISLHNKRTDCWIIVKGRVFDVTSYVEEHPGGDAILTNAGDDSTEGFYGPQHPG GAFQLIEDYCIGELEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10012954 [exp]	0	1
AT2G24970			unknown protein		Lus10020094 [exp]	2.6	0.8568
AT5G27430			Signal peptidase subunit (.1)		Lus10001092 [exp]	6.9	0.7490
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	10.9	0.8344
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	11.0	0.8112
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Lus10028543 [exp]	12.3	0.8037
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	14.2	0.8333
AT3G53730			Histone superfamily protein (....		Lus10040849 [exp]	18.6	0.8200
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	19.7	0.7976
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	21.6	0.8241
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	27.4	0.7891

Compare expression of checked genes

Lus10012954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.