Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 134 / 5e-36 S-locus lectin protein kinase family protein (.1) AT4G27290 120 / 3e-31 S-locus lectin protein kinase family protein (.1) AT1G11280 116 / 8e-30 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G65790 108 / 5e-27 ARK1 receptor kinase 1 (.1) AT4G21380 108 / 5e-27 ARK3 receptor kinase 3 (.1) AT1G61490 107 / 1e-26 S-locus lectin protein kinase family protein (.1) AT1G61610 105 / 4e-26 S-locus lectin protein kinase family protein (.1) AT1G65800 103 / 2e-25 ARK2 receptor kinase 2 (.1) AT4G21390 102 / 5e-25 B120 S-locus lectin protein kinase family protein (.1) AT1G11350 102 / 6e-25 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039767 [exp] 311 / 6e-101 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 230 / 9e-71 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 221 / 2e-67 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 214 / 7e-64 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 209 / 3e-62 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 153 / 1e-42 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10042266 [exp] 150 / 7e-42 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 139 / 9e-38 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025891 [exp] 139 / 9e-38 AT4G21380 593 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 175 / 2e-50 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 175 / 2e-50 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 172 / 1e-49 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 142 / 8e-39 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 141 / 1e-38 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128650 [exp] 132 / 3e-38 AT4G27290 225 / 8e-69 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 137 / 2e-37 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.005G014900 [exp] 130 / 1e-34 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412700 [exp] 130 / 1e-34 AT4G27290 783 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036532 [exp] 125 / 1e-34 AT1G11340 247 / 6e-75 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10012955 pacid=23158540 polypeptide=Lus10012955 locus=Lus10012955.g ID=Lus10012955.BGIv1.0 annot-version=v1.0 ATGGGTCGTCATCTCTGGTTCACCATCTTCATTCTCTTCTCTTCCGAACCCCATCTCTGCTTTGGTGCTGATAGGATTACTCTGAACCAATCTTTATCTG CAGACCACACTCTGGTCTCATCAGGAAGTAGATTCGAACTGGGTTTCTTCAAGCCAGGTAACTCGTCAAACTATTACCTTGGAATCTGGTACTATAGAGT CTCTGTCAGGACGGTAGTCTGGGTTGCAAACAGAGAATCCCCCATTTCCGACGACCATCTGTCAGGTGCCGTGTTCAGAATCTTCGGAGGTAGTTTACTT CTGTTCAGCAAGTTCCAGAAGATACCGATTTGGTCGACTGATCAGTCGAACCCTTCTTCAGCGGGTAGAGCGGCTGTTCTTCTTGACGATGGGAATCTAG TGTTAGTGGGTGGTGCTGCTGGTTCTGAAATCTTGTGGCAGAGCTTTGACAACCCAAGTGATACAAATCTTCCAGGTGCGAAATTCGGCCGCAAGAAGAT CACGGGTAAGTACTCGAATCTGGTTTCGTGGAAGTCCAAGGACGATTCTGCTCCTAGGAGATTCTCAATGCAGCTAAACCCGAACGGGTCGAGTCAGTTT GTGCTCATAGACAAGGACAGCAACAATTCCTCCCTGCATTGGAACAGTGGGACTTAG
AA sequence Show only first row Show all	>Lus10012955 pacid=23158540 polypeptide=Lus10012955 locus=Lus10012955.g ID=Lus10012955.BGIv1.0 annot-version=v1.0 MGRHLWFTIFILFSSEPHLCFGADRITLNQSLSADHTLVSSGSRFELGFFKPGNSSNYYLGIWYYRVSVRTVVWVANRESPISDDHLSGAVFRIFGGSLL LFSKFQKIPIWSTDQSNPSSAGRAAVLLDDGNLVLVGGAAGSEILWQSFDNPSDTNLPGAKFGRKKITGKYSNLVSWKSKDDSAPRRFSMQLNPNGSSQF VLIDKDSNNSSLHWNSGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	0	1
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	1.0	0.9716
AT1G18210			Calcium-binding EF-hand family...		Lus10027081 [exp]	2.0	0.9102
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	4.6	0.8989
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	6.3	0.8680
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10000559 [exp]	7.2	0.8988
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	7.9	0.8747
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	8.1	0.8895
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	8.7	0.8961
AT1G23450			Tetratricopeptide repeat (TPR)...		Lus10029138 [exp]	10.1	0.7635
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10029998 [exp]	11.5	0.8204

Compare expression of checked genes

Lus10012955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.