Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61390 116 / 5e-29 S-locus lectin protein kinase family protein (.1.2) AT2G19130 115 / 1e-28 S-locus lectin protein kinase family protein (.1) AT1G61500 114 / 2e-28 S-locus lectin protein kinase family protein (.1) AT1G61550 114 / 3e-28 S-locus lectin protein kinase family protein (.1) AT1G61420 113 / 6e-28 S-locus lectin protein kinase family protein (.1) AT1G61380 111 / 3e-27 SD1-29 S-domain-1 29 (.1) AT4G21380 110 / 9e-27 ARK3 receptor kinase 3 (.1) AT1G61480 107 / 1e-25 S-locus lectin protein kinase family protein (.1) AT1G11280 105 / 4e-25 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G11350 104 / 9e-25 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039767 [exp] 337 / 9e-110 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 288 / 3e-88 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 286 / 5e-88 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039733 [exp] 256 / 5e-79 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 235 / 2e-71 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 179 / 6e-51 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 172 / 2e-48 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10033743 [exp] 171 / 6e-48 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 166 / 3e-46 AT4G21380 593 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121000 [exp] 157 / 3e-43 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 155 / 2e-42 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119200 [exp] 142 / 5e-38 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 128 / 5e-33 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 126 / 3e-32 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 125 / 3e-32 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015400 [exp] 125 / 3e-32 AT4G27290 683 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 125 / 5e-32 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020200 [exp] 123 / 1e-31 AT4G27290 517 / 3e-176 S-locus lectin protein kinase family protein (.1) Potri.010G017600 [exp] 123 / 3e-31 AT4G27290 837 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10012956 pacid=23158523 polypeptide=Lus10012956 locus=Lus10012956.g ID=Lus10012956.BGIv1.0 annot-version=v1.0 ATGAGTGATGATGGGAACGTCCAGATGATCTTCTGGATGGAGGCTACTCAGAAGTGGTTCTTGACCTGGACGCAGCCCCAGGGGCAATGCGAGATTGAAT CTTATTGTGGCGTGTTTGGTTCATGTGACGACGAATCCACACCTACTTGTCATTGCCTGGAAGGGTTCATTCCCAAGTCGAACGACGAGTACAAATCCAA CGTGTATTACAGCGGCTGCATCAGGAAGTCTGAGCTCCTGTGTAGGAGTTCGGGGAGTAGTACTGATGATGTCTTCATTCAAAATGCCGTGCATGACACG ACATCAGGCTCCCCTGCATCCAGATCAGCTGGGAATGTCCAAGAGTGTGAATCGATCTGCTCCTGCGCCTGCTTCTGCAATGTGTATGCTTATGAGGGCG GTAGATGCTCCGTCTGGAATGGAGAAGTGTATGATATGTACAGGCTTGGTAATGAATCTACTGGCGTCTGGCGTGCCGATTTATGTAGGGTTGCTGCTGA AATCCCAGCTTCTGGTGGTATTAAGAGAAGGGTTCTTGAGCTTGTGCTTGCCTCTCTGGCTGCGGCTGTTCTAATTGGGGGGATTTTACTGTTTTCAGTC TCGAGATCAAACTGTTGGTGCAAGCTAGTTAAACAGGAAAGAATGTCGAAGACAGCTACAATATTGCAGATGGAGATGAAGAAAGCAACACAGCTGACGT TCTTAAGCATTAAGAGCGTATTAGCTGCAACAGACAACTTTTCTGACGCCAACAAACTAGGAGAAGGAGGGTTCGGACCTGTTTACAAAGGAGTTCTGCT TCCTGGTGATCGAGGAATGGCGAGGATCTTCCAGATTGATCAGGGAGAAGCTAATACCAACCATATAGTGGGAACATAG
AA sequence Show only first row Show all	>Lus10012956 pacid=23158523 polypeptide=Lus10012956 locus=Lus10012956.g ID=Lus10012956.BGIv1.0 annot-version=v1.0 MSDDGNVQMIFWMEATQKWFLTWTQPQGQCEIESYCGVFGSCDDESTPTCHCLEGFIPKSNDEYKSNVYYSGCIRKSELLCRSSGSSTDDVFIQNAVHDT TSGSPASRSAGNVQECESICSCACFCNVYAYEGGRCSVWNGEVYDMYRLGNESTGVWRADLCRVAAEIPASGGIKRRVLELVLASLAAAVLIGGILLFSV SRSNCWCKLVKQERMSKTATILQMEMKKATQLTFLSIKSVLAATDNFSDANKLGEGGFGPVYKGVLLPGDRGMARIFQIDQGEANTNHIVGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	1.0	0.9716
AT1G18210			Calcium-binding EF-hand family...		Lus10027081 [exp]	1.4	0.9237
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10000559 [exp]	3.9	0.9181
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	4.0	0.9079
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	5.5	0.9037
AT5G47090			unknown protein		Lus10021704 [exp]	6.0	0.8976
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	7.1	0.9050
					Lus10015488 [exp]	9.5	0.8980
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10022887 [exp]	10.7	0.7725
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	11.5	0.8898

Compare expression of checked genes

Lus10012956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.