Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15450 290 / 3e-96 Senescence/dehydration-associated protein-related (.1) AT3G21600 285 / 3e-94 Senescence/dehydration-associated protein-related (.1.2) AT4G35985 177 / 1e-51 Senescence/dehydration-associated protein-related (.1) AT3G51250 162 / 4e-46 Senescence/dehydration-associated protein-related (.1) AT2G17840 151 / 6e-42 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT3G21590 81 / 7e-18 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034970 [exp] 399 / 1e-140 AT4G15450 178 / 1e-53 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 302 / 5e-101 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 295 / 4e-98 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 171 / 1e-49 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 162 / 5e-45 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 151 / 7e-42 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 135 / 4e-38 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 117 / 1e-29 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 107 / 3e-26 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164748 [exp] 325 / 2e-110 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 321 / 2e-108 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 174 / 1e-50 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 167 / 6e-48 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 163 / 2e-46 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Lus10012957 pacid=23158586 polypeptide=Lus10012957 locus=Lus10012957.g ID=Lus10012957.BGIv1.0 annot-version=v1.0 ATGGACGAAGGGGAAGCTCTCGAACTCGCTTCCGGCGAGTTTCGAATCGCCCGAGTCGTGGACAATAAGGGAGGATTCCCTATTGCTACAGTGGTCAAAG TTGGGAAAGACCTTCAGTGGCCACTGACGAGAGACGAGCCTGTCGTAAAGCTGGATTCTTTCCACTACTTGTTCTCTCTGCCCATGAGAGACGGCTGTCC GCTGAGCTACGGCCTGACGTTTTCGAAGCAGCAAGGGAAGCATTTAGCGGCGTTGGATTCGTTTCTGGACCAGAATTCGTGCTTCTCTGCCTCTGGTTAT GGTTCTGATTCGGAATCGGTTAGGAATAATGGAGGGAGAAACAAGAGCAGTGGGGGAAATCTGGAGTGGAAACAGCTTGCTCCGAGGATTGAAGATTACA ATAACGTGCTGGCTAGGGGAATTGCGGAGGGTACTCTTCAGATTGTCAGGGGAATCTTCATGTGCAGCAACGTTTACAGCAACTTGGTGCATAGGTGTGC GGAGATGATTCTGAATGGCGGCGAAATCAACAGCTACAAAAAGCCAGTAGTAGCACAAAATGGGAACGGTGGAGCCAAAAAGGGTTTAAAGAGGGCTCGA GAGTTATCAAAGATGACCGAAGAGGTGAGCAAAGCGATGTTGGAAGGAGCGAATATGGCAACAGGTTCAGTGATGGGTCCAGTTCTCAATTCACAACCTG GCAAGACAATCCTCGCCACCCTTCCTGGAGAACTTCTCTTGGCTTCCCTTGATGCTATAAATAAGATATTGGACGCGGCGGAAGCAGCGGAGAAGCAAGC GCTTGCTGCCACCACCACCGCCACGACAAGGGTGGTCAGTCAGAGGTATGGCGAAGGTGCCGCGGAGACAACTGGGGATGTGCTGGCCACTGCCGGTCAC TGCGCTAACACGGCGTGGAATGTTGTTAAATTCAGGAAGGCTATCAATCCAGCTTCGTCTGTGGCCACGGGAGTTCATAGGAACAACAACAGAAACTACT AA
AA sequence Show only first row Show all	>Lus10012957 pacid=23158586 polypeptide=Lus10012957 locus=Lus10012957.g ID=Lus10012957.BGIv1.0 annot-version=v1.0 MDEGEALELASGEFRIARVVDNKGGFPIATVVKVGKDLQWPLTRDEPVVKLDSFHYLFSLPMRDGCPLSYGLTFSKQQGKHLAALDSFLDQNSCFSASGY GSDSESVRNNGGRNKSSGGNLEWKQLAPRIEDYNNVLARGIAEGTLQIVRGIFMCSNVYSNLVHRCAEMILNGGEINSYKKPVVAQNGNGGAKKGLKRAR ELSKMTEEVSKAMLEGANMATGSVMGPVLNSQPGKTILATLPGELLLASLDAINKILDAAEAAEKQALAATTTATTRVVSQRYGEGAAETTGDVLATAGH CANTAWNVVKFRKAINPASSVATGVHRNNNRNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	0	1
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	3.2	0.9502
					Lus10003556 [exp]	3.2	0.9489
					Lus10025141 [exp]	3.5	0.9456
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	4.0	0.9410
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10028015 [exp]	4.2	0.9330
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	5.0	0.9391
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	5.1	0.9267
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	5.3	0.9356
AT2G45010			PLAC8 family protein (.1.2)		Lus10028184 [exp]	5.8	0.9100
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	6.0	0.9376

Compare expression of checked genes

Lus10012957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.