Plant FIBer expression Database

Lus10012958 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40570 435 / 2e-150 initiator tRNA phosphoribosyl transferase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G087300
[exp]
488 / 3e-171 AT2G40570 680 / 0.0 initiator tRNA phosphoribosyl transferase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF04179 Init_tRNA_PT Rit1 DUSP-like domain
Representative CDS sequence
>Lus10012958 pacid=23158576 polypeptide=Lus10012958 locus=Lus10012958.g ID=Lus10012958.BGIv1.0 annot-version=v1.0
ATGTCCAAGACTATCCCAATCTGGACTTGCGTTTTGAATCGAGCAATTCGCAATTACGTCAGCAGAGTCCAGAGTAGTACAGTGGAGGTGGGAACTCATG
ATGCAGAAAGCACTGCTCTTGATTGGGATTGTTCATTGCATCTCCCTCTTTGGGTTTCCGAAACTGAGAAGTCCGCAATCGAGGAGCGAATCGAAGGATG
GGTCGAACAATTGGAATCAAGTGGTGCTGACATTGCTTCTCTTGCTTCATGCTTGAAGAAGCCCTTGAGGCCACTTTGGATATCACAAAAAACTGTCATC
TGGTTGAATGAAGTCCCTGATCACACTTCATGGGACTTCACTGCAATCATACTCGTGTCGGCTTCATCCCAAACCGGCGTGTTTCAACACCGGACTACCT
CAGAGTTCAGCTGGAACTATATACCGGGAGCTGGTGACGATGAAGAGAGTTGGGCTAGGGGTCTCTCGCCTAGTCTCTTCTGGGACCATGCTTATGATAT
TATTAGTTCAGGTCCTGAAGTGTGCAACCAAATGGTTGCTGATATTGTTGAGAAGGATCGAGTTTATCGATCTCAACGAGGACAGGACGCTCCTCAAATC
TCGCTAAAGCTTCCGAAATTACTCGGTACCAATGTGGACATGTGCAGTTCGAGTACTTGTATTGATAAGTCTGAAGGAAGTTCTACTGTGTTCTGGATTG
GTTCGACGAATGTTGCTGTTGGAAGCATTCGACATGCGGCTAGCATATCTGATGTTGAGTGCATTTTGGATTGCAATGAAGAACACATACCTGATCAGGT
TCTAGATTCTGAGGATTATTTGCATCTTCCTATAGTGAGCTCAAAACATGACCGCTTTTCCTTATCGAGCAATCTGCCCGCTGCTATGAACTTCGCAAAG
GCACATCTCAGGAAAGGACACAGACTCTTAGTTTGTTGCCAGAATGGAACATTTGATGGTGGGAAATCATTCGAGAGCAAGCTTATCACGAAATGGGAAA
TGAGACGACGACTGGTGTTCCTTTGTAAGTATGCAGTGACTGCAAGGCCTTCCAGAGGGAACTTGAGGCAGGTCTTTGGGTTTCTTTCACAAGGGGGAGT
TACTGATGTGCCTTGA
AA sequence
>Lus10012958 pacid=23158576 polypeptide=Lus10012958 locus=Lus10012958.g ID=Lus10012958.BGIv1.0 annot-version=v1.0
MSKTIPIWTCVLNRAIRNYVSRVQSSTVEVGTHDAESTALDWDCSLHLPLWVSETEKSAIEERIEGWVEQLESSGADIASLASCLKKPLRPLWISQKTVI
WLNEVPDHTSWDFTAIILVSASSQTGVFQHRTTSEFSWNYIPGAGDDEESWARGLSPSLFWDHAYDIISSGPEVCNQMVADIVEKDRVYRSQRGQDAPQI
SLKLPKLLGTNVDMCSSSTCIDKSEGSSTVFWIGSTNVAVGSIRHAASISDVECILDCNEEHIPDQVLDSEDYLHLPIVSSKHDRFSLSSNLPAAMNFAK
AHLRKGHRLLVCCQNGTFDGGKSFESKLITKWEMRRRLVFLCKYAVTARPSRGNLRQVFGFLSQGGVTDVP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G40570 initiator tRNA phosphoribosyl ... Lus10012958
[exp]
0 1
AT1G64530 NLP6 Plant regulator RWP-RK family ... Lus10032423
[exp]
5.5 0.6886
AT1G70610 ABCB26, ATTAP1 ATP-binding cassette B26, tran... Lus10036857
[exp]
7.7 0.7184
AT5G03770 AtKdtA, KDTA KDO transferase A (.1) Lus10017664
[exp]
8.8 0.6981
AT5G50210 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEAT... Lus10019464
[exp]
18.7 0.6683
AT1G15240 Phox-associated domain;Phox-li... Lus10035877
[exp]
20.9 0.6933
AT5G23720 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, ... Lus10043195
[exp]
21.2 0.6863
AT3G16560 Protein phosphatase 2C family ... Lus10008378
[exp]
34.5 0.6633
AT1G24490 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE ... Lus10011398
[exp]
37.1 0.6340
AT5G36930 Disease resistance protein (TI... Lus10007722
[exp]
46.6 0.6407
AT1G01790 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFF... Lus10017823
[exp]
72.5 0.6575

Lus10012958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.