Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1243 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1198 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 1187 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 1177 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 1160 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28860 931 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 901 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 898 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 879 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G27940 873 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041565 [exp] 1291 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 1265 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 1257 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1061 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 1058 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 1051 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 1014 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10030674 [exp] 910 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 907 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G087100 [exp] 1960 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 1265 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1216 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1130 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1110 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 1082 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 1045 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 1038 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1012 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 934 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10012959 pacid=23158567 polypeptide=Lus10012959 locus=Lus10012959.g ID=Lus10012959.BGIv1.0 annot-version=v1.0 ATGGATCAGTGTCCAGATGAGAAGAAAAGGAGTAGTAGTGATGGTGAGAGGATAAGAGTTGGGATGATGCTGAGATATGCAGATTGGGTAGATGTTCTGC TGATGTTGATGGGAACAATTGGTGCGATTGGAGATGGTATGTCTACTAATTGCTTGCTTGTCTTTGCCAGCCGCCTTATGAACAGCTTGGGCTATGCTGG TCAGAATCATGGTGCCACCACCACCAGCTTCATGTCTGAAGTCCAAAAGTGCAGCTTATACTTTGTGTATCTAGGACTGGCAGTCATGGTTCTGGCATTC TTGGAAGGGTACTGCTGGAGCAAAACAAGCGAGAGACAAGTAGTGAAGATAAGGTACAAATATCTAGATTCCATCCTAAGGCAAGAAGTTGGATTCTTTG ATTCCCAGGAAGCCACCACTTCCGAGATCATCGACAGCATCTCTAACGACACCTCCCTTCTCCAGGAAGTCTTGAGCGAAAAGGTTCCAACGTTCGTGAT GCATTCGTCGGTGTTCATCTCAGGGCTAGCATTCGCCACGTACTTCTCGTGGCGACTAGCCCTGGTAGCCTTCCCGACATTGCTCCTCCTGATAATCCCA GGCATCATCTACGGGAAGTACCTCATCCTGCTGTCGAGGGAGTCGAGAGAGGAGTACGGGAAGGCGAACAGCGTACTGGAGCAGGCACTGAGCTCGATTA AGACGGTGTACTCGTTCACAGCGGAGAGGCGGATTTACGAGAGTTATTCGAGGGTACTGGAGAGGACGACGAAGCTCGGAATAAGGCAAGGGATAGCCAA AGGGGTGGCAGTTGGTAGCAGTGGTCTCTCGTTTGGGATATGGGCTTTCATTGCTTGGTATGGGAGTCGTTTGGTTATGTACAAAGGGGAGAGCGGCGGG AGGATCTACGCTGCTGGCATTTCCTTCATCTTGAGTGGACTGTCTCTCGGGATCGCCCTTCCGGACCTCAAGTACTTTACGGAAGCTTCCGTAGCCGCCG CGAGGATCTTCCCCAGGATCCACCGGATTCCGGAGATCGACTCGGAAGGCAACAAAGGACTCATCCTCGACCACATCCATGGTGAAATCCACTTCGATCG TGTCAGCTTCACTTACCCTTCCCGTCCCGACGCTGCAATCCTCACTAACTTCGACCTCAGAATCGATGCCGGCACCACCGTGGCTCTCGTCGGCGCTAGC GGCAGCGGGAAATCCACCGTGATCTCCTTACTTCAGCGTTTCTATGATGTCTGCGGTGGAGTGGTGAAGTTCGACGGTGTTGATATAAGGACGATGAACT TGAAATGGATGAGAGGGCAGATGGGCCTCGTCAGTCAGGAGCATGCTCTATTTGGTGCCTCCATCAAGGATAACATCATGTTTGGGAAGCTTGATGCTTC CATGGATGAGGTGGTTGCAGCAGCCACCGCTGCTAATGCTCACAGCTTTATTAGGCAACTCCCCCATGGATATGAAACCAAGGTTGGTGAAAGAGGAGCA CTACTATCAGGTGGCCAGAAGCAGAGAATTGCAATTGCCAGGGCTATCATAAGGAGTCCTTCGATTCTTTTACTCGATGAAGCAACGAGTGCTCTTGATT CCGAGTCTGAAAAGGTCGTACAAGATGCTCTTGATCAAGCCTCCATGGGAAGAACGACTCTGGTGGTCGCTCACAAGCTCTCCACAATCAGGAATGCCGA CCTCATTGCTGTTGTAAGAAATGGTTCCATCATAGAGGCAGGCTCTAATAATGACCTCATCAACATAACAAACGGCCACTATGCAAAACTCGCCAAGATG CAGAGACAATTCAGCTGCGATGATTATCAGGAACAGAACCCCGAAACACAACTTGCTTCGGTCACTAGAAGTAGTGCTGGCCGTCAAAGCACGGGGAAAT CTAGCCCTGCATTCTTTGCTTCGCCGTTACCTGTAATTGATAGTGAAAAACTGGTAGCCCATCGGCCACCTTCATTCTCTCGGCTTCTCTCCTTGAACTC ACCCGAATGGAAGCAGGCAGTTATGGGAAGCCTGTCAGCTGTAGCCTTCGGTGGTGTTCAGCCTTTCTATGCCTTGACAGTTGGTGGGATGATTGCGGCT TTCTTTGCACCGAGCCATGAGGAAGTGAATGCTCGAATTCGGCTGTACTCCTTGATTTTCTGCTCACTCTCTTTGGTTTCCATGATCCTGAACCTTGTGC AGCACTACAATTTTGCATACATGGGGGAAATGCTTACTAAGAGAATCCGATTAAAAATGTTGGAAAAGATCCTGTCTTTCGAGGCAGCTTGGTTCGATGA AGAGCAGAACTCTAGTGGAGCTCTATGTTCGAGACTAAGCAATGAGGCCTCCATCGTTAAATCCCTAGTTGCAGATAGAGTGTCTCTCCTACTCCAAACA ACATCTGCTGTCACCATTGCTATGATCATGGGGTTAGTTGTGGCTTGGAAGCTTGCACTTGTGATGATTGCTGTCCAACCACTCACAATCCTATGTTTCT ACACCCGCAAAGTCTTGCTCTCTAGCATCTCAACAAACTTTGTCAAGGCTCAAAATCAAAGCACCCAAATTGCCGTAGAAGCTGTTTATAATCACAGAAT TGTAACCTCATTTGGAAGTGTGGGGAAGGTACTTCAAATCTTCGACGAGGCTCAAGAGGAGCCAAGAAGGGAGGCAAGGAAGAAAGCATGGTTAGCAGGA TTCGGTATGGGCTCAGCTCAGTGTCTAACTTTCATGTCATGGGCTCTGGACTTCTGGTATGGAGGAACGCTGGTGGAGAAGGGAGAGATATCCGCGGGAG CTGTATTCAAAACATTTTTCATCCTCGTAAGTACCGGTAAAGTCATCGCCGAAGCTGGCAGCATGACCACTGATCTAGCCAAGGGTTCAGCTGCAGTTGC TTCAGTGTTCAAGATCCTCGATAGGGTATCATTGATTGGAGGAGTTTCCAATGTCAGGGATGAAACCAAGTTAGAAAAAATCACAGGAAGAGTAGAATTG AAAAGGGTTGATTTTGCATATCCAGGTAGGCCAGAGATATTGGTCCTTAACCAATTCAGCCTGGAAGTAAGTCCAAGTACCAGCATTGGACTTGTGGGTA AAAGTGGATGCGGGAAATCGACAGTGATTGGACTGATACAAAGGTTCTACGATGTTGAGAAAGGTTCAGTGAAGGTGGATGGAGTGGACATAAGAGTTCT AGACATCAACTGGTACAGAAGACACACCGCCCTGGTTAGCCAAGAACCAGTTATCTTCTCTGGCAGCATCCGCGACAATATAGTGTTTGGTAAACCTGAT GCATGCGAGAATGAGGTTGTTGATGCTGCAAGAGCTGCAAATGCACATGAATTCATCTCATCGTTGAAAGATGGATACGAGACTGAATGTGGGGAGAGAG GGGTGCAAATATCGGGAGGGCAGAAGCAGAGGATAGCAATTGCAAGGGCGATAATCAGAAATCCAATGATCCTACTGCTAGACGAGGCGACGAGTGCTCT TGATATTCAATCGGAGCAAGTTGTGCAGGAAGCATTGGACAGAATAATGGTAGGAAGGACAACGATTGTAGTGGCTCACAGGCTCAACACAATCAAGAAG TTGGATTCCATTGGCTTTGTGGCTGATGGGAAATTGGTGGAGCGTGGTACTTATGCTCAGTTGAAGAGCAAGAAAGGCGCTTTCTTTAAGCTTGCCAGCC TGCAGAACAACTAG
AA sequence Show only first row Show all	>Lus10012959 pacid=23158567 polypeptide=Lus10012959 locus=Lus10012959.g ID=Lus10012959.BGIv1.0 annot-version=v1.0 MDQCPDEKKRSSSDGERIRVGMMLRYADWVDVLLMLMGTIGAIGDGMSTNCLLVFASRLMNSLGYAGQNHGATTTSFMSEVQKCSLYFVYLGLAVMVLAF LEGYCWSKTSERQVVKIRYKYLDSILRQEVGFFDSQEATTSEIIDSISNDTSLLQEVLSEKVPTFVMHSSVFISGLAFATYFSWRLALVAFPTLLLLIIP GIIYGKYLILLSRESREEYGKANSVLEQALSSIKTVYSFTAERRIYESYSRVLERTTKLGIRQGIAKGVAVGSSGLSFGIWAFIAWYGSRLVMYKGESGG RIYAAGISFILSGLSLGIALPDLKYFTEASVAAARIFPRIHRIPEIDSEGNKGLILDHIHGEIHFDRVSFTYPSRPDAAILTNFDLRIDAGTTVALVGAS GSGKSTVISLLQRFYDVCGGVVKFDGVDIRTMNLKWMRGQMGLVSQEHALFGASIKDNIMFGKLDASMDEVVAAATAANAHSFIRQLPHGYETKVGERGA LLSGGQKQRIAIARAIIRSPSILLLDEATSALDSESEKVVQDALDQASMGRTTLVVAHKLSTIRNADLIAVVRNGSIIEAGSNNDLINITNGHYAKLAKM QRQFSCDDYQEQNPETQLASVTRSSAGRQSTGKSSPAFFASPLPVIDSEKLVAHRPPSFSRLLSLNSPEWKQAVMGSLSAVAFGGVQPFYALTVGGMIAA FFAPSHEEVNARIRLYSLIFCSLSLVSMILNLVQHYNFAYMGEMLTKRIRLKMLEKILSFEAAWFDEEQNSSGALCSRLSNEASIVKSLVADRVSLLLQT TSAVTIAMIMGLVVAWKLALVMIAVQPLTILCFYTRKVLLSSISTNFVKAQNQSTQIAVEAVYNHRIVTSFGSVGKVLQIFDEAQEEPRREARKKAWLAG FGMGSAQCLTFMSWALDFWYGGTLVEKGEISAGAVFKTFFILVSTGKVIAEAGSMTTDLAKGSAAVASVFKILDRVSLIGGVSNVRDETKLEKITGRVEL KRVDFAYPGRPEILVLNQFSLEVSPSTSIGLVGKSGCGKSTVIGLIQRFYDVEKGSVKVDGVDIRVLDINWYRRHTALVSQEPVIFSGSIRDNIVFGKPD ACENEVVDAARAANAHEFISSLKDGYETECGERGVQISGGQKQRIAIARAIIRNPMILLLDEATSALDIQSEQVVQEALDRIMVGRTTIVVAHRLNTIKK LDSIGFVADGKLVERGTYAQLKSKKGAFFKLASLQNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	0	1
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	3.5	0.7933
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	5.8	0.8506
AT1G51340			MATE efflux family protein (.1...		Lus10027367 [exp]	7.5	0.7845
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	8.9	0.7634
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	9.1	0.8245
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	9.6	0.7951
					Lus10005647 [exp]	11.0	0.7143
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	12.8	0.8131
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	15.9	0.7444
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	18.3	0.7788

Compare expression of checked genes

Lus10012959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.