Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23550 93 / 4e-23 MATE efflux family protein (.1) AT3G23560 90 / 4e-22 ALF5 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) AT4G21903 65 / 3e-13 MATE efflux family protein (.1.2) AT2G34360 65 / 3e-13 MATE efflux family protein (.1) AT1G66780 64 / 6e-13 MATE efflux family protein (.1) AT4G21910 64 / 7e-13 MATE efflux family protein (.1.2.3.4) AT1G15150 64 / 9e-13 MATE efflux family protein (.1) AT1G15170 64 / 1e-12 MATE efflux family protein (.1) AT1G15160 64 / 1e-12 MATE efflux family protein (.1) AT3G59030 63 / 2e-12 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034966 [exp] 144 / 6e-42 AT3G23560 579 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10009132 [exp] 69 / 1e-14 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10020049 [exp] 67 / 6e-14 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 67 / 1e-13 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10017639 [exp] 66 / 3e-13 AT3G59030 755 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10018134 [exp] 66 / 3e-13 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10019492 [exp] 65 / 4e-13 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10028540 [exp] 65 / 5e-13 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 65 / 5e-13 AT1G15170 524 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117300 [exp] 111 / 8e-30 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117100 [exp] 111 / 1e-29 AT3G23560 545 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117400 [exp] 98 / 6e-25 AT3G23550 540 / 0.0 MATE efflux family protein (.1) Potri.011G117200 [exp] 77 / 6e-18 AT3G23560 305 / 2e-101 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.012G051900 [exp] 75 / 1e-16 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.004G094800 [exp] 72 / 1e-15 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.004G094900 [exp] 71 / 3e-15 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120600 [exp] 71 / 3e-15 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.017G120400 [exp] 67 / 7e-14 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.011G002200 [exp] 66 / 1e-13 AT1G11670 669 / 0.0 MATE efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012960 pacid=23158537 polypeptide=Lus10012960 locus=Lus10012960.g ID=Lus10012960.BGIv1.0 annot-version=v1.0 ATGGTGCTATTGCTTGCTACCGCGATAACACTTGATTCCGTCCAAGGTGTTTTATCAGGTTTGAATCGCTTGCTCAAGTTCTTTTTTGTTTTCATCGTCA GCTTGGGGTTTTTAAAGGTTCGATTTTTCTCAAACACTTTAGGAGTGGCAAGAGGATGCGTATGGCAACATATGGCTGTGTACGCAAACTTAGGGACATT TTTCTTCATTGGGATGCCTATTGCTTGCCTTCTTGCATTCAAGTTCAATTTATATGTCAAGGGATTGTGGATTGGTTTGATATGTGGTCTTTCATGCCAA GCTAGCACCCTCATGTTCATCACATTAAGATTAAAAAAACAAGGGGGAGTTACTGTTGCTTACTGTTCACGTGAACAGTAA
AA sequence Show only first row Show all	>Lus10012960 pacid=23158537 polypeptide=Lus10012960 locus=Lus10012960.g ID=Lus10012960.BGIv1.0 annot-version=v1.0 MVLLLATAITLDSVQGVLSGLNRLLKFFFVFIVSLGFLKVRFFSNTLGVARGCVWQHMAVYANLGTFFFIGMPIACLLAFKFNLYVKGLWIGLICGLSCQ ASTLMFITLRLKKQGGVTVAYCSREQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23550			MATE efflux family protein (.1...		Lus10012960 [exp]	0	1
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10035793 [exp]	8.6	0.8898
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	12.4	0.8713
AT1G29195			unknown protein		Lus10002327 [exp]	12.6	0.7691
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008979 [exp]	13.9	0.8129
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10022427 [exp]	15.7	0.8681
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010475 [exp]	17.7	0.7694
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	17.7	0.8677
AT3G52610			unknown protein		Lus10022698 [exp]	20.2	0.8674
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	21.5	0.8668
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10034371 [exp]	23.4	0.8665

Compare expression of checked genes

Lus10012960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.