Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23560 350 / 1e-118 ALF5 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) AT3G23550 343 / 3e-116 MATE efflux family protein (.1) AT1G73700 231 / 2e-72 MATE efflux family protein (.1) AT5G52450 226 / 3e-70 MATE efflux family protein (.1) AT2G34360 210 / 2e-64 MATE efflux family protein (.1) AT1G15150 206 / 8e-63 MATE efflux family protein (.1) AT3G21690 204 / 9e-62 MATE efflux family protein (.1) AT1G15160 200 / 1e-60 MATE efflux family protein (.1) AT1G71140 199 / 3e-60 MATE efflux family protein (.1) AT2G04040 198 / 7e-60 ATDTX1 detoxification 1, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034966 [exp] 464 / 5e-164 AT3G23560 579 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10001318 [exp] 227 / 1e-70 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10019492 [exp] 214 / 7e-66 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10041994 [exp] 213 / 2e-65 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10027169 [exp] 212 / 2e-64 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 206 / 6e-63 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 204 / 2e-62 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10029694 [exp] 202 / 3e-61 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 200 / 4e-60 AT3G21690 712 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117100 [exp] 393 / 9e-136 AT3G23560 545 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117300 [exp] 390 / 1e-134 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117400 [exp] 366 / 6e-125 AT3G23550 540 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 248 / 1e-78 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 227 / 7e-71 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 227 / 7e-71 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116700 [exp] 226 / 2e-70 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 201 / 8e-61 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.017G120400 [exp] 200 / 1e-60 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.017G120500 [exp] 200 / 2e-60 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10012961 pacid=23158575 polypeptide=Lus10012961 locus=Lus10012961.g ID=Lus10012961.BGIv1.0 annot-version=v1.0 ATGTTCGCCGGTCACCTCGGCCAACTCCACCTCGCCGGAGCAACCCTCGCTAATTCCTGGGCCACCGTCACTGGTTTCGCCTTCATGACAGGGCTAAGTA GATCTCTGGAAACACTATGTGGCCAAGGATTTGGGGCAAAGCTCTACAGAATGATGGGAATCAATCTCCAAGCTTCCTGCATAATCTTCTTCCTATTCTC CCTTGCCATTTCCATTATCTGGTTATACATAGAGCCAATTTTGATCCTGCTAGGTCAAGACCCCAAAATTTATGCAATGGCTGCTCTCTACGTGAAATGT CTTATTCCAGGAGTGTTTGCATATGGGTTCTTGCAGAACATTTTAAGGTTTCTCCAGACGCAGTCTGTGGTTATACCGCTTGTTCTCTTGTCAGCGTTTC CAGCCTGCATTCATATCGCCTTAGCTTATGCTTTGGTTTATGCAACTCCACTTGGTTTCATTGGGGCTCCATTGGCTGCTTCGCTTTCGTTGTGGGTTAG TTTCATTGCCTTGGCTGTGTACGTCGGTATCGACAAGAGGTTCCACCAAACTTGGACTGGATGTTCATGCAAATCGTTCAGTCATTTTGTTCATTCACTC AAACTGGCTCTTCGTTCTGCTGCAATGGTATGCTTGGAATATTGGGCTTTTGAGATTTTGATTTTCTTGGCCGGGTTGATGCCGGATTCTGAAATATCAA CATCATTACTGGCTATGTGTGTCAACACAGAAACCATAGCTTATATGCTCACATATGGTCTTAGTGCTGCAGCAAATACAAGGGTTTCTAATGAGTTAGG AGCTGGTAAGCCGAGTCGCGCTAAGAGTGCCATGGCAGTGACCCTCAAGCTTTCTGTCCTACTTGCCGTTGTAGTTGTTGTGGGTCTAGCACTCGGCCGG AACATCTGGGCCGGGCTTCTTCAGTGA
AA sequence Show only first row Show all	>Lus10012961 pacid=23158575 polypeptide=Lus10012961 locus=Lus10012961.g ID=Lus10012961.BGIv1.0 annot-version=v1.0 MFAGHLGQLHLAGATLANSWATVTGFAFMTGLSRSLETLCGQGFGAKLYRMMGINLQASCIIFFLFSLAISIIWLYIEPILILLGQDPKIYAMAALYVKC LIPGVFAYGFLQNILRFLQTQSVVIPLVLLSAFPACIHIALAYALVYATPLGFIGAPLAASLSLWVSFIALAVYVGIDKRFHQTWTGCSCKSFSHFVHSL KLALRSAAMVCLEYWAFEILIFLAGLMPDSEISTSLLAMCVNTETIAYMLTYGLSAAANTRVSNELGAGKPSRAKSAMAVTLKLSVLLAVVVVVGLALGR NIWAGLLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10012961 [exp]	0	1
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	3.7	0.6901
AT1G06260			Cysteine proteinases superfami...		Lus10041788 [exp]	5.3	0.6667
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	6.2	0.7405
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	8.4	0.6655
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	23.9	0.6610
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	30.3	0.6418
					Lus10000458 [exp]	31.2	0.6549
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10032091 [exp]	31.3	0.6621
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10026778 [exp]	32.6	0.6637
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041540 [exp]	35.2	0.5970

Compare expression of checked genes

Lus10012961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.