Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26080 270 / 7e-87 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G57050 263 / 1e-84 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT1G72770 261 / 1e-82 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 249 / 1e-77 HAB2 homology to ABI2 (.1) AT1G07430 228 / 2e-70 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 222 / 5e-69 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 222 / 2e-68 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G59220 211 / 4e-64 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G51760 204 / 1e-61 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT4G31750 150 / 3e-42 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034965 [exp] 451 / 6e-159 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10026447 [exp] 256 / 6e-80 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 255 / 1e-79 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10016493 [exp] 230 / 2e-71 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10040738 [exp] 229 / 9e-71 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10004703 [exp] 212 / 2e-64 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10019017 [exp] 209 / 4e-64 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 200 / 9e-62 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 204 / 2e-61 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164632 [exp] 417 / 3e-145 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.018G060300 [exp] 262 / 2e-82 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.006G224600 [exp] 261 / 3e-82 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.003G044200 [exp] 251 / 3e-78 AT1G72770 576 / 0.0 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.015G018800 [exp] 235 / 3e-74 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 236 / 6e-74 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.008G059200 [exp] 234 / 2e-73 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.012G131800 [exp] 232 / 2e-72 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.015G133900 [exp] 227 / 1e-70 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.001G092100 [exp] 218 / 5e-67 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10012962 pacid=23158558 polypeptide=Lus10012962 locus=Lus10012962.g ID=Lus10012962.BGIv1.0 annot-version=v1.0 ATGGACCCGGTGGACGACGATCCAGACCGAAAACTCGAGCGGGACGACTCACTCACCGACCTGGCCTCCTCAACGAGCTCAGGCGCGTTGTCCACTCTCT GGACCGAAGATTCTCGAAGTGGTAGCGCAAGCTCCGTCGATATCTCCGTTGCAAGCGGAAGTTCGGGCGAGATTCTCACCGCCTTGGCCAGGGAGGACTT CGATTTGGAAACGGCGCCGGCGATTGAAGTGCGGGATAAGTGCATCGGAAGAAAGAACAACCGATCACTGAGCTGGGGATTCACGTCAGTGATCGGGAGG AGGCGAGAGATGGAGGATGCCGTCACCATTGCCCCGGGATTTATTTCGAGGACCTGCAGTAACGTCGGCGGATGCACGGCTCCTGGTTCCAGATCCTCCG GCGAGGTCTCTCCCGTGCACTTCTTCGGCGTTTACGACGGCCACGGCGGCCCTCAGGTGGCCAATTTCTGCAAGGAAAGGATGCACCACGTGATTGCAGA GGAGTGTGATCGGGCAACGGCGGGCGGTTATGAAGAATGGCAGAGGAGGTGGGAAGCTGCTCTTTCCGGCAGCTTTGAGAGGACGGACGACGAAATAGCG GCAGAAGCAGTTGCTCCGGAGATCGTTGGATCAACGGCTGTGGTTGTTGTGCTATCTAGCTGCCAGATTATCACATCAAACTGCGGGGATTCCCGGGCAT TGCTCTGCCGTGGAACCCAAGCTATCCCTTTGAGTGTTGATCAGAAGCCTGATAGAGAAGATGAACTCCAGAGGATTGAGGAAGCTGGAGGGAAGGTGTT TAATTGGAATGGTGCTAGAGTTCTGGGTGTCCTTGCCATGTCTAGAGCCATAGGCGACAGGTACTTGAGGCCATACGTAATCCCGGTGCCGGAGATAACA TTCATGACAAGGAGCGAAGAAGACGAATTCTTAATCGTGGCAAGCGACGGGCTGTGGGATGTCATGACAAACGACGAGGTAGGGGAAGTAGCTCGTAGAA TACTAAGAAGGTGGCGAAGATTGTCAACGACATCGAGCAATAGTAGTGAAAACATGATGTCGGCTGCGCAAGCTGTGGCTGACAATCTGACTGAGAAAGC CTACGCGAGGAACAGTTCCGATAACATCTCCATAATCGTGGTTGATCTCAAACCCAAAAGAAGGCGGCCGGCAGTTGCAGCAAGAGTGCCTGAGCCGCAA AGTTAA
AA sequence Show only first row Show all	>Lus10012962 pacid=23158558 polypeptide=Lus10012962 locus=Lus10012962.g ID=Lus10012962.BGIv1.0 annot-version=v1.0 MDPVDDDPDRKLERDDSLTDLASSTSSGALSTLWTEDSRSGSASSVDISVASGSSGEILTALAREDFDLETAPAIEVRDKCIGRKNNRSLSWGFTSVIGR RREMEDAVTIAPGFISRTCSNVGGCTAPGSRSSGEVSPVHFFGVYDGHGGPQVANFCKERMHHVIAEECDRATAGGYEEWQRRWEAALSGSFERTDDEIA AEAVAPEIVGSTAVVVVLSSCQIITSNCGDSRALLCRGTQAIPLSVDQKPDREDELQRIEEAGGKVFNWNGARVLGVLAMSRAIGDRYLRPYVIPVPEIT FMTRSEEDEFLIVASDGLWDVMTNDEVGEVARRILRRWRRLSTTSSNSSENMMSAAQAVADNLTEKAYARNSSDNISIIVVDLKPKRRRPAVAARVPEPQ S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Lus10012962 [exp]	0	1
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	3.0	0.8626
AT4G13530			unknown protein		Lus10041074 [exp]	6.0	0.8492
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	6.0	0.8091
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10005157 [exp]	7.1	0.8185
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	8.5	0.8428
AT3G48660			Protein of unknown function (D...		Lus10015769 [exp]	12.2	0.8017
AT3G14280			unknown protein		Lus10037453 [exp]	12.5	0.8136
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	12.6	0.8293
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	17.5	0.8029
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	18.7	0.8046

Compare expression of checked genes

Lus10012962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.