Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19900 879 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G25880 872 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT1G79750 865 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G11670 856 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT2G13560 411 / 2e-137 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 406 / 2e-135 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043025 [exp] 981 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10011125 [exp] 927 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10025823 [exp] 898 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 810 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10037561 [exp] 806 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005484 [exp] 781 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10034963 [exp] 778 / 0 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005483 [exp] 766 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10006036 [exp] 595 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046600 [exp] 913 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 904 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.006G236500 [exp] 904 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.001G189700 [exp] 879 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 879 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.002G156000 [exp] 408 / 2e-136 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.002G135300 [exp] 403 / 5e-134 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G079900 [exp] 395 / 2e-131 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G043700 [exp] 394 / 2e-130 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10012964 pacid=23158577 polypeptide=Lus10012964 locus=Lus10012964.g ID=Lus10012964.BGIv1.0 annot-version=v1.0 ATGAGCGGATACTCTCTGCTGAGAGATCCTCGCCATAACAAGGGGCTTGCCTTTACCGAGAAAGAGAGGGACTCGCACTATTTGCGCGGTCTTCTTCCTC CTGTGGTTCTCGCTCAGCAGCTTCAGGAGAAGAGATTGATCAACTCCATTAGACAGTATGAGCTTCCAATTCAGAAGTACATGGCTATGATGGAGCTTGA GGAGAGAAATGAAAGGCTGTTCTATAAGCTTCTAATCGACAACGTTGAGGAATTGCTGCCGGTTGTCTACACTCCCACCGTTGGGGAAGCTTGCCAGAAA TATGGAAGCATATTCAAGCGTCCTCAGGGTCTATACATCAGCCTCAAAGAGAAGGGAAGAATCCTTGATGTGTTGAAAAACTGGCCCGAGAAGAGCATTC AAGTCATTGTTGTTACTGATGGTGAAAGAATTTTGGGACTCGGGGATCTTGGATGCCAGGGCATGGGTATTCCAGTTGGAAAATTGTCTCTTTACACAGC ACTCGGAGGAATTCGTCCTTCTGCATGCCTGCCTATCACCATTGATGTTGGCACAAACAATGAGAAATTGCTGAATGATGAATTCTACATTGGACTTAGG CAAAGAAGGGCCACAGGCCAGGAATATGCTGAACTTCTGCATGAATTTATGTCAGCCGTAAAGCAGAACTACGGAGAAAAAGTTCTTATTCAGTTTGAAG ATTTTGCAAACCACAATGCTTTTGAGCTCCTTGCAAAGTATGGCACAACTCATCTCGTATTCAATGATGATATACAGGGTACAGCATCTGTTGTCCTTTC AGGAGTTGTTGCAGCATTGAAGTTACTTGGCGGTTCCCTTGCTGATCACAAGTTCCTCTTCCTTGGTGCTGGGGAAGCTGGGACTGGCATAGCTGAGCTT ATAGCTCTTGAGATGTCAAAACAGACAAGTACTCCTCCGGAAGAATGTCGTAAGAGGATCTACTTGGTTGACTCTAAGGGTTTAATAGTCAAGTCCCGGT TAGAGTCACTTCAACACTTCAAGAAGCCATGGGCTCATGAGCATGAGCCTGTGAAGAACCTCTTGGATGCAGTCCACGCAATAAAACCAACAGTTCTAAT TGGGGCATCTGGAATGGGGAAAACATTCACAAAGGAGATCGTTGAGGCTATGTCTTCCTTCAATGAGAAACCTCTTATCATGGCTCTTTCCAACCCAACC TCGCAAGCAGAGTGCACAGCCGAAGAAGCATACACCTGGAGTAAGGGCAAAGCCATTTTTGCTAGTGGGAGTCCGTTCGATCCAGTAGAATACGAAGGCA AAGTTTATGTTCCTGGCCAGGGAAACAACGCATACATTTTCCCTGGATTTGGGTTGGGGGTGGTTATGTCCGGAGCTATTCGTGTTCATGACGACATGCT TCTCGCAGCTTCTGAGGCTTTGGCGGCACAAGTAACAGATGCAGAGTACGAGAAGGGGTTGATATACCCACCTTTCTCCAAGATCAGAAAGATTTCAGCC CACATTGCTGCTAAAGTTGCTGACAAGGCCTACCAACTTGGTTTGGCGAGCAGGATTCCGCGGCCAGCAGATCTCGTAAAATATGCTGAGAGCTGCATGT ACAGCCCTCTCTACAGGAACTACCGGTGA
AA sequence Show only first row Show all	>Lus10012964 pacid=23158577 polypeptide=Lus10012964 locus=Lus10012964.g ID=Lus10012964.BGIv1.0 annot-version=v1.0 MSGYSLLRDPRHNKGLAFTEKERDSHYLRGLLPPVVLAQQLQEKRLINSIRQYELPIQKYMAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQK YGSIFKRPQGLYISLKEKGRILDVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKLLNDEFYIGLR QRRATGQEYAELLHEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLSGVVAALKLLGGSLADHKFLFLGAGEAGTGIAEL IALEMSKQTSTPPEECRKRIYLVDSKGLIVKSRLESLQHFKKPWAHEHEPVKNLLDAVHAIKPTVLIGASGMGKTFTKEIVEAMSSFNEKPLIMALSNPT SQAECTAEEAYTWSKGKAIFASGSPFDPVEYEGKVYVPGQGNNAYIFPGFGLGVVMSGAIRVHDDMLLAASEALAAQVTDAEYEKGLIYPPFSKIRKISA HIAAKVADKAYQLGLASRIPRPADLVKYAESCMYSPLYRNYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	2.0	0.9595
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	4.4	0.9616
					Lus10031312 [exp]	8.0	0.9287
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	8.2	0.9466
AT5G38900			Thioredoxin superfamily protei...		Lus10005082 [exp]	12.0	0.9264
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	12.0	0.9462
AT5G41761			unknown protein		Lus10012634 [exp]	12.4	0.9414
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	12.6	0.9466
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10034296 [exp]	15.2	0.9342
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10019970 [exp]	17.0	0.9421

Compare expression of checked genes

Lus10012964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.