Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19930 617 / 0 RNA-dependent RNA polymerase family protein (.1) AT2G19910 613 / 0 RNA-dependent RNA polymerase family protein (.1) AT2G19920 575 / 0 RNA-dependent RNA polymerase family protein (.1) AT4G11130 105 / 1e-22 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT3G49500 105 / 1e-22 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT1G14790 89 / 1e-17 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042134 [exp] 105 / 2e-22 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002910 [exp] 100 / 3e-21 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002017 [exp] 97 / 4e-20 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10019164 [exp] 97 / 8e-20 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10002361 [exp] 94 / 1e-19 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081300 [exp] 727 / 0 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.006G164400 [exp] 714 / 0 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.015G073700 [exp] 103 / 4e-22 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.006G253500 [exp] 102 / 1e-21 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.008G136100 [exp] 95 / 2e-19 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.018G028100 [exp] 94 / 5e-19 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.008G135800 [exp] 91 / 4e-18 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 85 / 3e-16 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 79 / 2e-14 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [flax] [poplar] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10012965 pacid=23158587 polypeptide=Lus10012965 locus=Lus10012965.g ID=Lus10012965.BGIv1.0 annot-version=v1.0 ATGGCGGACGTCGTCTACTCTTACCCCGAATATCCTCCGCTCCCTCCCACCGTGGAGGAACTTGTGACAAAAATCCGCTATAAGCAAGTTCCGAATAGAC CTGGACCTCGTCCGCCACTGCAAACCTTAACGAGGGAGAAGCTCGCTCGGTTATCGGAAACCGAGTGTAAATCCCTTCTCTATCGAATTGAATCTCAGAC GTTTCACTCATCTTTAGACGATTTCATCAGTTACCTCATCGATAATCGGATGTCGGCAGCGCCAGGGCCATCATCATATTGTTCTCTCCCAGCGGCACCA CCAGTGACTCAATATTATTGTTATTCTTCTCCACCGGCGGTTTCGCCATCTTCTTCGCCGTCAGTGCCGCCATCTCCTTCTTCTTCTTCATCTTCTTCTT CATCTTCTTCTTCATCTTCTGCTTCGCCCTTGAAGCGCTGCTCTACATCTCAACTGCCTCCTCCTCCGCCGCCGACGACGCAAAAGAACTTTAGTCCTAG CCCTACTACAGTGAAGCTCCCAATGAATGCTACATACTTTAATATTCCTCAACCCCTAGTCCCTCGCAAGCTAGAAGATGATTTACACGACCATCTCATA ACCAATGGCGGACCAGTTTCAGTGATGGGTGATCGGATGGAGCTCGATTCTAGGAATGATCATCTGGCTACCAATGGAGGACCATTTGCACAGATGATGT ATCTGTGGGAGCAGCTGGAGTTTAGGAGGGCATTTCTTATCTTGAACTATCTTGGAGGGAGTAAGCTGGAAGATCATATGACAGTCAGTCGAATCAGATG GTTGGGAGGTTTAACGATGAGAAAGTTTGAGGAAGAAGTTTGGTCCTCTATTGGCCGGCAATGTCTTGTTGATGTGAAACATCGCTTAAAGAATGTTGAT TGGAACCCCAAGAAGCCTCATGTGTACCACTGCACTGTGGAGCATACCCATGATAATTATCGGTTAAATATTACCTTCAAGGGCCCTTATGTGTCTAACA TGAGAAACTTTCTGCAAACGACCATGGGAGATGACCATGTATTGTTGGTCAAGTTCGGTGCCCACCGGGATAGAGATGACATGTCTAAGTGCGATGATAA TCGATGTAGGGAGAAGCATGCTAGTATCATTCAGAAAGGGATTCAAGTTGGTCCTTACAATTACCATTTTTTCGTTTTCAAAGACGGCCAGAAAGAGGAG AAGAAGAAACAGGAAAAGAAGAAAGAGGAATTTAGTTCAGGAGTGAAGTGTTATTTTATCCGCATTGAAGATGGCAATAAAAAATTCAAAACAATTCGTG AAGCTAGATCCTTCTTCATGAATGCTGATACTTTGCCAAATTCATCCAACTACATGGCCAGGTTCAATCTGATTTTATCGAAGTCCATGAAACTGGATTT GGAACTCGCAGATGTAACTATCAGATGTGAACCGGATATTCCTTGCCTGGATACCTATGGTAAAGAAGTGCCCGACAAGAAAGGCAAACTTCTCATACAT ACGGATGGAACAGGGTTCATATCAGAGGATTTAGCTAGGCTATGCCCAGATGTATCTCAAGGGAGGTGCCATGACAGTGACATTGGGCAGATTCATGAAG TGAACTCAGATTTCCGTCTCAGGCAACCACCTTTCTTGATGCAGCTTCGCCTCTTTTACAATGGAAGTGCCATAAAGGGAACTCTACTTGTAAATAAGAA GCTTCCTCATAGAACGATTGTTGTTCGGGATTCCATGGTTAAAGTTAAACCATACGATGATCTGTGTGAGAAAGCTACTGCAAATTCACTGGAGATTGTT AACACGAGTCGTCAGCCAAAGCCTGCAGTTCTTTCAAGAAATTTGATTATGCTACTAAACTATGGCGGTGTCCCTTGGGACTTCTTCATGGACCTTTTGT ATAAAGCCTTAGAAGATGCAAGGGCTGTTCTCTTCAAAAGGCGTACTGCTGCTCGAGCTGCAAGTTTTCATCATGAGAAGGAAATGATTGCAGCTGGGAT CCCCTTTGAAGAATCGTACTTGAAGTTCCGTCTGCCTGCAATGATGAGTGACGAGAAAAAAAAGCTGAGAGGAGGGAAAATTCCTTTGCCCGATTCATAT TACTTAATGGGAACAGCTGATCCCTCGGGAGTTTTAAAGACTGGTGAAGTTTGCATAATCTCAGAAAATGGGCAGGTTTCTGGCAAGGTGTTAGTTTATA GAAATCCTGGTCTCCATTTTGGTGATATCCACATCTTAGACGCTGTCTATGTTAAGGAAATGGACGATTATGTGGGCAATGCCAAATTTGGCATCTTTTT CCCTACTCATGGACCACGGTCTCTGGCTGATGAAATGGCTGGGGGTGACTACGATGGTGACTTGTTCTTTGTGTCAAGAAATCAGGAGCTGCTGGATAGT TTCAAGCAGGGGAAACCATGGGAGTCACCCTCTTTACCATCTAATAAGCAAAGCAAGAAGAGCAAGAAAGTCCCAAAAGATATGTCTGATAACGAGTTAG AGACTGAGCTTTTCCGAAATTTTTGGGACACAAGGTTTAATCCAAGTGCCACTATGGGGATGGCGGCAGAAAGCTGGCAGGTAACGATGGACAATCTTTT AACATCAGAAAATGCTGCAACTTATAAGGCTTTGGAGAAGAAAATCTTTCGCTTGATTGACATATACTACGATGCTTTGGATGCACCAAAGACTGGGGAC AAGGTTATCTTTCCATTAGAATTGAAGGTGGATCGGTTCCCGCACTACATGGAGGAGAAGATTGAAGCTGCTCGAAAAAATAGAAAAAAGATTCTGACTT ACCACTCTACTTCAATCCTGGGAGCTATATACGATGAAGTGCAAAACTTCGAAAAAATGGATGAAATGCCAATTACTGAAATCGTGAAACTTCCATGCTT TGCGGAAAGAGCTCCTGAACATCTTCTTGAGATGTGGACGATATACTATAAAGAATACAGGACCGATATGGCAAAAACATATAGCATAGAAGAGGAAGCT AAGAAGAGTGAGGCTGCGGAGGCAGTCAATCAACGATATAGAGTGAAGTTGTATGGTCCGACGGGGGACTTCTACACAAGCGGAAAGACGAGAGAGGAGT TGTTTGAGGAGGCTCGAGCTATATATCAGGTTGTTTATGATCATGCTGAGGAGAAGAGACGTTATGCTGATGGCGACATAGCGGAACAACGGAAAGCCAT TACAAAATGCGGCTTTGTTTGGAAATCAGCAGGTACGGCTCTTTGTGCTCTCTACATTTCGAGTCTCGAGGAGAAACAAATGATGTGCTCAGAATCTGCA TACAAGGAAATGTTTGGATGA
AA sequence Show only first row Show all	>Lus10012965 pacid=23158587 polypeptide=Lus10012965 locus=Lus10012965.g ID=Lus10012965.BGIv1.0 annot-version=v1.0 MADVVYSYPEYPPLPPTVEELVTKIRYKQVPNRPGPRPPLQTLTREKLARLSETECKSLLYRIESQTFHSSLDDFISYLIDNRMSAAPGPSSYCSLPAAP PVTQYYCYSSPPAVSPSSSPSVPPSPSSSSSSSSSSSSSSASPLKRCSTSQLPPPPPPTTQKNFSPSPTTVKLPMNATYFNIPQPLVPRKLEDDLHDHLI TNGGPVSVMGDRMELDSRNDHLATNGGPFAQMMYLWEQLEFRRAFLILNYLGGSKLEDHMTVSRIRWLGGLTMRKFEEEVWSSIGRQCLVDVKHRLKNVD WNPKKPHVYHCTVEHTHDNYRLNITFKGPYVSNMRNFLQTTMGDDHVLLVKFGAHRDRDDMSKCDDNRCREKHASIIQKGIQVGPYNYHFFVFKDGQKEE KKKQEKKKEEFSSGVKCYFIRIEDGNKKFKTIREARSFFMNADTLPNSSNYMARFNLILSKSMKLDLELADVTIRCEPDIPCLDTYGKEVPDKKGKLLIH TDGTGFISEDLARLCPDVSQGRCHDSDIGQIHEVNSDFRLRQPPFLMQLRLFYNGSAIKGTLLVNKKLPHRTIVVRDSMVKVKPYDDLCEKATANSLEIV NTSRQPKPAVLSRNLIMLLNYGGVPWDFFMDLLYKALEDARAVLFKRRTAARAASFHHEKEMIAAGIPFEESYLKFRLPAMMSDEKKKLRGGKIPLPDSY YLMGTADPSGVLKTGEVCIISENGQVSGKVLVYRNPGLHFGDIHILDAVYVKEMDDYVGNAKFGIFFPTHGPRSLADEMAGGDYDGDLFFVSRNQELLDS FKQGKPWESPSLPSNKQSKKSKKVPKDMSDNELETELFRNFWDTRFNPSATMGMAAESWQVTMDNLLTSENAATYKALEKKIFRLIDIYYDALDAPKTGD KVIFPLELKVDRFPHYMEEKIEAARKNRKKILTYHSTSILGAIYDEVQNFEKMDEMPITEIVKLPCFAERAPEHLLEMWTIYYKEYRTDMAKTYSIEEEA KKSEAAEAVNQRYRVKLYGPTGDFYTSGKTREELFEEARAIYQVVYDHAEEKRRYADGDIAEQRKAITKCGFVWKSAGTALCALYISSLEEKQMMCSESA YKEMFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	0	1
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	2.2	0.9041
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	2.4	0.8688
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10036905 [exp]	9.2	0.8139
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10030772 [exp]	9.7	0.8086
AT5G58610			PHD finger transcription facto...		Lus10012522 [exp]	9.9	0.8611
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	10.8	0.8753
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	11.5	0.8861
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10002639 [exp]	13.6	0.8247
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	13.9	0.8826
AT3G13275			unknown protein		Lus10020466 [exp]	14.4	0.8458

Compare expression of checked genes

Lus10012965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.