Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19950 649 / 0 GC1 golgin candidate 1 (.1.2) AT1G18190 68 / 1e-11 GC2 golgin candidate 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034941 [exp] 1075 / 0 AT2G19950 685 / 0.0 golgin candidate 1 (.1.2) Lus10009060 [exp] 67 / 3e-11 AT1G18190 499 / 5e-169 golgin candidate 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086600 [exp] 747 / 0 AT2G19950 626 / 0.0 golgin candidate 1 (.1.2) Potri.006G164350 [exp] 332 / 1e-109 AT2G19950 327 / 3e-108 golgin candidate 1 (.1.2) Potri.015G039800 [exp] 71 / 2e-12 AT1G18190 509 / 1e-172 golgin candidate 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09787 [flax] [poplar] Golgin_A5 Golgin subfamily A member 5
Representative CDS sequence Show only first row Show all	>Lus10012966 pacid=23158524 polypeptide=Lus10012966 locus=Lus10012966.g ID=Lus10012966.BGIv1.0 annot-version=v1.0 ATGCCACCTCTCCCCACTCGTGTAAAAATTAACATTGGCAGTGCGGTGTCCGGCTCCCTTGGTGGCACTACTGGTCTGGTCTTACGAGATGCTTCTAGCT CTATTCTAACATCTTCTAGTGGACAAGGATCTCAACCAAGAAAGCCAAAGCCAAAGTCAAAGTCTAAGTCAAAGGCTCAAAAGAGGCTCCCAAAAGAAGA ATCTACAATAGCTAGTGAGCTCGTGCTAGAGCCCACTAGGGCACAACCATCAGAAGCAGATTTAATTAATCAGTCTTCTCATTCAGTTCAAAGTGATGAG AATGCTTCCAGCAGTTCCATAGCTCAATCAAGCGTTGAGCAGCAACAGACGATCGATATCGTTGCTTCAAGTGTAGCTCTACCAGAAACAACAAATGATT CAGTCAAGCATGAAGCTGACAGTGTTGAAATTCCTGTAACTGTTACAGACCCTGTGCTACCTTCTCCAAATACCGAGATTCTTAATAATAAGGCTTCAGA TGTCCAAGAAAAGGAACCCTCTTCACCATCACCTGCCAAAGAAACCGAAGTTGTCAAAGAACACGAGCCAATCATTTCTGTGCTTGATACCAGGACAAGT GAAATTGATGTTTCCTCAAAGATTGAACAAGAAAAATCAAGTGAAGATTCTCTTATAAGTAATGAAAACTCAGCAAAGGATGACGAGGTTAAGGTAGAAC CTCCTGCCCATCAAAAGAAGAAACTTGAACATAAAACCGATGCTTCTCCCGGAAAAATTCAGGAACAACTTGAGGAGGCACAAGGACTGCTCAAGACTGC AAATGCCACCGGTCAGTCAAAAGAGGCTAGACTAGCACGGGTTTGTGCTGGGCTTTCAAGCCGCCTTCAAGAATACAAGTCTGAAAATGCACAACTCGAG GAGCTTTTGATTGCAGAGAGAGAATTGAGCAAATCATGTGAGGCTCACATAAAACAGCTGCAAGAAGACTTGTCTATGTCTAAGCATGAAGTAACAAGAG TAGAGTCAAACATGACTGAGGCTCTAGCAGCAAAGAATGCTGAAATTGCAGCACTTCTTGGTTCCATGGATGCACTTAAGAAACAAGCTGCTTTATCAGA AGGCAGTCTAGCTTCATTACAGGCAAACATGGAGTCTCTAATGAGAAATAGGGAACTGAGCGAGACAAGGATGATGCAGGCTTTGCGAGAAGAGTTAGCG TCTGTGGAACGGAGAGCAGAAGAAGAGCGTGTGGCACACAATGCTACTAAAAAGGCAGCTATGGAGAGGGAGATGGATCTCGAAAACAGAGCTGTTGAGG CATCCACAGCTCTTGCTAGAACTCAGAGAGTTGCAGATGAAAGGACTGCAAAGGCTTCAGAGCTTGAACAAAAAGTAGCACTACTTGAGGTTGAATGTGC AACACTAAACCAAGAATTGCAAGATATGGAGGCCCGAGTTCGACGAGGCCAGAAGAAGGTCCCTGAAGAGTTGAACCAATCAATTCAGATGCAGGCCTGG CAGGAGGAAGTAGAGCGTGCGCGACAAGGTCAGAAAGATGCTGAAAACAAGCTTTCTTCTCTTGAGACTGAATTGCAGAAACTAAGAGTTGAAGTGGCAG CCATGAAAAGAGATGCAGAACACTATTCACGCCAGGAGCATACGGAGCTTGAAAAACGCTATCGGGAACTAACCGATTTACTGTATTATAAGCAAACACA GTTAGAAACCATGGCCAGTGAAAAGGCTGCAGCAGAATTTCAGTTGGAGAAGGAAATGAAGCGTCTTCAAGAAGTACAGGTTGAGGCGGAAAGAAGCAGA GTTGCCCGTCGCCCATCCACCTCTTGGGAAGAAGACGGTGAAATGAAAACACTCGAGCCTCTCCCAGTTTACCACCGTCATTTGGTAGGCGCTAGTATGC AGTTGCAAAAGGCAGCAAAGCTTTTGGATTCCGGAGCTGCCAGGGCCACGCGATTCTTGTGGCGATACCCAACAGCTCGGCTCATCTTTTTATTCTACCT GGTGTTCGTGCATCTCTTCATGATGTATTTATTGCATCGCCTTCAGGAGCAAGCGGACGATCTTTCGGCGAGAGAAGTGGCGGAATCGATGGGGCTTTCG GACCCAAAGATGTCGTTACGTGCCCGACGTTGA
AA sequence Show only first row Show all	>Lus10012966 pacid=23158524 polypeptide=Lus10012966 locus=Lus10012966.g ID=Lus10012966.BGIv1.0 annot-version=v1.0 MPPLPTRVKINIGSAVSGSLGGTTGLVLRDASSSILTSSSGQGSQPRKPKPKSKSKSKAQKRLPKEESTIASELVLEPTRAQPSEADLINQSSHSVQSDE NASSSSIAQSSVEQQQTIDIVASSVALPETTNDSVKHEADSVEIPVTVTDPVLPSPNTEILNNKASDVQEKEPSSPSPAKETEVVKEHEPIISVLDTRTS EIDVSSKIEQEKSSEDSLISNENSAKDDEVKVEPPAHQKKKLEHKTDASPGKIQEQLEEAQGLLKTANATGQSKEARLARVCAGLSSRLQEYKSENAQLE ELLIAERELSKSCEAHIKQLQEDLSMSKHEVTRVESNMTEALAAKNAEIAALLGSMDALKKQAALSEGSLASLQANMESLMRNRELSETRMMQALREELA SVERRAEEERVAHNATKKAAMEREMDLENRAVEASTALARTQRVADERTAKASELEQKVALLEVECATLNQELQDMEARVRRGQKKVPEELNQSIQMQAW QEEVERARQGQKDAENKLSSLETELQKLRVEVAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMKRLQEVQVEAERSR VARRPSTSWEEDGEMKTLEPLPVYHRHLVGASMQLQKAAKLLDSGAARATRFLWRYPTARLIFLFYLVFVHLFMMYLLHRLQEQADDLSAREVAESMGLS DPKMSLRARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	0	1
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	2.4	0.9055
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10034240 [exp]	3.2	0.8984
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	3.5	0.9028
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	4.1	0.9147
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	6.5	0.8939
AT2G27900			unknown protein		Lus10009613 [exp]	6.9	0.9004
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	7.9	0.8835
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	8.0	0.8868
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	10.6	0.8569
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	12.7	0.8974

Compare expression of checked genes

Lus10012966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.