Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52140 84 / 9e-21 unknown protein AT3G16330 79 / 6e-19 unknown protein AT4G29110 76 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034944 [exp] 238 / 6e-82 AT1G52140 100 / 3e-27 unknown protein Lus10038274 [exp] 80 / 4e-19 AT3G16330 124 / 2e-35 unknown protein Lus10025828 [exp] 79 / 7e-19 AT1G52140 138 / 8e-41 unknown protein Lus10037566 [exp] 58 / 3e-11 AT1G52140 79 / 2e-18 unknown protein Lus10014153 [exp] 57 / 2e-10 AT4G29110 84 / 1e-20 unknown protein Lus10006040 [exp] 42 / 4e-05 AT1G52140 78 / 2e-17 unknown protein Lus10005478 [exp] 41 / 0.0001 AT1G52140 89 / 2e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086500 [exp] 118 / 5e-34 AT4G29110 139 / 3e-41 unknown protein Potri.001G188900 [exp] 84 / 7e-21 AT1G52140 127 / 2e-36 unknown protein Potri.003G049800 [exp] 71 / 1e-15 AT1G52140 129 / 1e-37 unknown protein Potri.006G236700 [exp] 58 / 8e-11 AT4G32860 94 / 4e-24 unknown protein Potri.018G046500 [exp] 50 / 3e-08 AT1G52140 94 / 1e-23 unknown protein Potri.014G139900 [exp] 39 / 0.0005 AT1G52140 87 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012967 pacid=23158585 polypeptide=Lus10012967 locus=Lus10012967.g ID=Lus10012967.BGIv1.0 annot-version=v1.0 ATGGCCTTGTCAGTCGTGTCCCCACAAGAGTACGAGTTCAGCTGCAGCAACACCCCGTCCAATAATAACCCCTTCTTCTTCTTCCCTTTCCACAACAAGC GCAATAAGAACAAGTCCGTCAAGTACCACGATGACGTCACCACGGTGGCGGCCGTGCAGAGGATGCTGGAGATGCTGAACCGAAACGAGATTGAGATGCC GGTTCATTCGGCGTTCGTTTCGGCGGCGGCGTCTCCGCTGCCGGGATTCGGGATGAGTCCGGCGATGGGGAAGCAGCTGAGGATAACGGACTCGCCGTTT CCGGTGAAGGAAGAGGACGGCAGTGGTGGGGATGGGCAGGTGGATAAGGCGGCGGATGATTTCATTAAGAGGTTCTATAAGGATTTGAAGTCGCAGAAAG CGGTTGTGGATCACTCTCCTTGCCATAGCTTATGGGGCCGATGA
AA sequence Show only first row Show all	>Lus10012967 pacid=23158585 polypeptide=Lus10012967 locus=Lus10012967.g ID=Lus10012967.BGIv1.0 annot-version=v1.0 MALSVVSPQEYEFSCSNTPSNNNPFFFFPFHNKRNKNKSVKYHDDVTTVAAVQRMLEMLNRNEIEMPVHSAFVSAAASPLPGFGMSPAMGKQLRITDSPF PVKEEDGSGGDGQVDKAADDFIKRFYKDLKSQKAVVDHSPCHSLWGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52140			unknown protein		Lus10012967 [exp]	0	1
AT1G52140			unknown protein		Lus10025828 [exp]	1.7	0.9296
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	3.7	0.9031
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10029458 [exp]	3.9	0.9011
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	7.2	0.8501
					Lus10003132 [exp]	8.1	0.8935
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10042288 [exp]	11.6	0.8249
AT3G16330			unknown protein		Lus10038274 [exp]	11.8	0.8978
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	14.5	0.8917
					Lus10028522 [exp]	15.2	0.8662
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10032719 [exp]	17.2	0.8547

Compare expression of checked genes

Lus10012967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.