Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20000 1080 / 0 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT3G16320 652 / 0 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48150 119 / 1e-27 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT3G04240 62 / 1e-09 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78770 48 / 2e-05 APC6 anaphase promoting complex 6 (.1) AT3G11540 47 / 7e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G17270 46 / 9e-05 Protein prenylyltransferase superfamily protein (.1) AT5G37130 44 / 0.0006 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034945 [exp] 1034 / 0 AT2G20000 801 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10004242 [exp] 121 / 3e-28 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10042152 [exp] 120 / 3e-28 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10003576 [exp] 62 / 2e-09 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 54 / 7e-07 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 53 / 8e-07 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033033 [exp] 48 / 2e-05 AT5G63200 542 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10021336 [exp] 45 / 0.0003 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 44 / 0.0006 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086300 [exp] 1171 / 0 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.006G164000 [exp] 1147 / 0 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.012G075000 [exp] 117 / 3e-27 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1) Potri.017G065600 [exp] 74 / 2e-15 AT2G20000 74 / 2e-16 HOBBIT, CDC27 family protein (.1) Potri.001G389300 [exp] 59 / 1e-08 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1) Potri.019G025600 [exp] 57 / 5e-08 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 56 / 1e-07 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 48 / 4e-05 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G170000 [exp] 47 / 8e-05 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.004G080800 [exp] 44 / 0.0003 AT5G17270 909 / 0.0 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10012968 pacid=23158554 polypeptide=Lus10012968 locus=Lus10012968.g ID=Lus10012968.BGIv1.0 annot-version=v1.0 ATGGAAGCCATACTTGTTGACTGTGTGAACAACAGCCTCCGGCATTTCATGTTCCGAAACGCCATTTTCATGTGCGAACGCCTCTGCGCCGAGTTCCCTT CCGAGATACATTTACAATTGTTAGCTGGGTGCTATCTGCAAAATAATCAAGCTTACGCTGCTTATCATATCCTGAAAGGAACACAAATGGCTCAATCCCG CTACTTGTTTGCAATATCATGCTTTCAGATGGACCTCTTAAAGGAAGCAGAAGCAGCACTATGTCCTGCTAATGAGCCAGGTGGAGAGATGGACCTCTTA AAGGAAGCAGAAGCAGCACTATGTCCTGCTAATGAGCCAGGTGGAGAGGTTCCCAATGGAGCAGCTGGGCATTACCTTCTTGGTCTCATCTACAGGTATA CCGATAGAAGAAAAAGAGCTATCCAACACTTTAAGCAGGCTTTGTTGATAGATCCTCTTCTCTGGGAGGCATACGAAGAGCTCTGTATATTAGGTGCTGC TGAAGAAGCAACTGCAGTTTTTGGTGAAGCAGCTTCTCTATGTATTCAAAAGCAGTACTCACATTTGATAGCTACGCAGAATCTGCAGATGACTAACGAT GATCGCACTGTAGTGTCAAGTCGGAATTCTAGCTCAGAGGATGGTAGTCCCAGGCAGCTGAAACATATGCAAGGCCCTAACCCAAGAGAACTAGCTGGAA ATTACCATGTGATGTCAGCAGTAGGAGGAGCTGGCAGTCAGCTTTCTAATGGGGGTCCTCCAAACATAGGGTTTTATAGTACTCCTTCACCCATGGCACA GTTATCGGGTGTTGCACCCCCACCATTATGTAGAAACATGCAGGCTAATGGTCCTAATCTTAGTAACAATAGTGTTGATAACTCTCCAAGGCCAGTTGTG AACACCAATATTCAAGCTCCCCGAAGAAAGGTTGTTGATGAAGGGAAATTACGGAAGATATCTGGAAGGTTATTTTCTGATTCTGGTCCTCGGCGTAGTT CAAGACTTGCTGTGGAGACAGCAGCCAACTCGAACACAACCACCACTGTAGTTGCGGGGAATGGTAATGGCAATTCTTCTAAGTTTCTTGGAGGTTCCAA GTTGAGTTCCATGGCAGTACGTTCTGTAACACTTCGTAAAGGACAGTCTTGGGCAAATGAAAATTACGATGAAGGACTCCGGAACGAGGCTTATGATGAT ATGCGTACCAATGCTTCTACAAATCCTGGTCCATCGTCTTCTGGTGATTCTAGATCTTTTGAAGCAGATGGAGAATCTATCACTGCTGGGTCAGCTGTGA TGAGTGCCTCGAAAGTTCTTAGCGGAGCTTCCGAAATATTGAATCTCTTAAAAAGCTATGGCGAAGGATACAGGCTCTCCTGTTTGCATAGGTGTCAGGA TGCACTGGATGCCTACTTGAAACTACCCCACAAACACTACAACACCAGCTGGGTGCTTTCTCAGGTTGGAAAAGCATATTTTGAATTGGTGGATTATTTG GAAGCTGATCGGGCCTTCAGTCTTGCTCGGCGAGCATCACCCTACAGCTTGGAAGGGTTGGATATATATTCTACTGTTCTATATCATTTGAAGCAAGACA TGAGGTTAAGTTACCTTGCCCAAGAACTGATATCAACTGATCGCTTAGCACCCCAATCTTGGTGTGCCATGGGAAATTGCTATAGTTTACATAAAGACCA TGAAACTGCCTTGAAGAATTTTCAGCGAGCTGCACAACTTAGTTCACGATTTGCTTACGCACACACACTTTGTGGGCACGAATACGTAGCTTTGGAGGAT TATGAAAATGGAATCAAGTGTTATCAGAATGCCTTGAGAATTGATACCAGACATTATAACGCGTGGTATGGACTTGGGATGGTCTACTTGAGACAGGAGA AGGTTGAATTCGCTGAGCACCACTTCAGAATGGCTTTCCAAATCAATCCACGTTCATCGGTTATAATGTCATATCTCGGCACTGCGTTACATGCGTTGAA GAGAAATGAAGAAGCGTTAGAAATGATGGACAGGGCAATATTGGCCGATAGAAAGAACCCTCTTCCAATGTATCAAAAGGCTAATATCCTTGTTAGCGTT GAAAGCTTTGATGAAGCTCTTGACGTTCTAGAAGAGCTCAAACAATACGCCCCTCGTGAAAGCAGCGTTTATGCGTTGATGGGTAAGATTTACAAGCGGC GAAATATGCCTGACAAAGCCATGCTTCATTTTGGCCATGCTTTGGATTTGAAGCCGTCTGCTACTGATGTGGCTATAATCAAGGCTGCCATTGAGATGCT TCACGTGCCAGATGAGTTGGAAGATGCAGATGAGTGA
AA sequence Show only first row Show all	>Lus10012968 pacid=23158554 polypeptide=Lus10012968 locus=Lus10012968.g ID=Lus10012968.BGIv1.0 annot-version=v1.0 MEAILVDCVNNSLRHFMFRNAIFMCERLCAEFPSEIHLQLLAGCYLQNNQAYAAYHILKGTQMAQSRYLFAISCFQMDLLKEAEAALCPANEPGGEMDLL KEAEAALCPANEPGGEVPNGAAGHYLLGLIYRYTDRRKRAIQHFKQALLIDPLLWEAYEELCILGAAEEATAVFGEAASLCIQKQYSHLIATQNLQMTND DRTVVSSRNSSSEDGSPRQLKHMQGPNPRELAGNYHVMSAVGGAGSQLSNGGPPNIGFYSTPSPMAQLSGVAPPPLCRNMQANGPNLSNNSVDNSPRPVV NTNIQAPRRKVVDEGKLRKISGRLFSDSGPRRSSRLAVETAANSNTTTTVVAGNGNGNSSKFLGGSKLSSMAVRSVTLRKGQSWANENYDEGLRNEAYDD MRTNASTNPGPSSSGDSRSFEADGESITAGSAVMSASKVLSGASEILNLLKSYGEGYRLSCLHRCQDALDAYLKLPHKHYNTSWVLSQVGKAYFELVDYL EADRAFSLARRASPYSLEGLDIYSTVLYHLKQDMRLSYLAQELISTDRLAPQSWCAMGNCYSLHKDHETALKNFQRAAQLSSRFAYAHTLCGHEYVALED YENGIKCYQNALRIDTRHYNAWYGLGMVYLRQEKVEFAEHHFRMAFQINPRSSVIMSYLGTALHALKRNEEALEMMDRAILADRKNPLPMYQKANILVSV ESFDEALDVLEELKQYAPRESSVYALMGKIYKRRNMPDKAMLHFGHALDLKPSATDVAIIKAAIEMLHVPDELEDADE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	0	1
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	2.4	0.8889
AT1G42440			unknown protein		Lus10013232 [exp]	3.3	0.8961
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	4.2	0.8863
AT3G01380			transferases;sulfuric ester hy...		Lus10039473 [exp]	4.5	0.8743
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	5.7	0.8741
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	5.7	0.8852
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	6.0	0.8752
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	8.5	0.8755
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10035748 [exp]	8.9	0.8407
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	9.5	0.8796

Compare expression of checked genes

Lus10012968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.