Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25800 545 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 523 / 2e-179 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT1G04470 239 / 5e-70 Protein of unknown function (DUF810) (.1) AT2G33420 238 / 1e-69 Protein of unknown function (DUF810) (.1) AT5G06970 206 / 5e-58 Protein of unknown function (DUF810) (.1) AT4G11670 112 / 3e-26 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034947 [exp] 766 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 529 / 0 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 462 / 5e-160 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 250 / 3e-74 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 248 / 9e-73 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 189 / 3e-52 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 168 / 7e-45 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 166 / 4e-44 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 157 / 4e-41 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085900 [exp] 621 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.006G238200 [exp] 553 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 551 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 265 / 5e-79 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 251 / 3e-74 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 182 / 7e-50 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 157 / 2e-41 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10012969 pacid=23158531 polypeptide=Lus10012969 locus=Lus10012969.g ID=Lus10012969.BGIv1.0 annot-version=v1.0 ATGAAGAAGATCACATCGTCCAAGCAACCGTCTAGGCAGCTGCAAGGTCCTCTTCCTCAACTCGCCATACTTGCACAAGACATTAGCCAACTGGCTTTTA GTGAGAAGGCTATATTCAGTCCTATATTCAAGAGATGGCACCCTCATGCTGCAGGTGTAGCAGTAGCTACACTTCATTCATCTTATGGAAAAGAGCTGAA TCGATTTATATCGAGCGTTAGTGAGTTGACGCCTGATGCCATACAAGTCCTGTCGGCTGCTGACAAATTGGAAAAGGATCTTGTCCAGATTGCAGTTGAA GACGCTGTTGATAGCGAAGATGGTGGGAAATCAATAATCCAACAGATGCCTCCTTATGAGGCTGAAGCTGCTATGGCCAATCTTGTGAAGTCGTGGATAA AAACCAGAGTTGACCGGCTAAAAGATTGGTTTGATAGGAATCTCCGCCAGGAGGTCTGGAATCCAAGAGCCAATAAGGAAAGATTTGCACCCTCTGCAGT TGAAGTCTTGAGAACTGTAGATGAGACTCTGGAAGCATTCTTCTTCCTACCAATTCCTATGCATTCAGTCTTACTTCCTGAGCTGGTAGTAGGTCTTGAT AGATGTCTCCAGAATTACATACTCGAGGCAAAATCTGGTTGTGGCAATCGAAACACTTACATCCCAACTTTACCAGCATTAACCAGATGCTCAACAGGAT CCAAATTCCATGTCTTCAAGAAGAAGGAGAAATCACAAATGAATCAGAGGGGGAAGTCTCAGATCGGTACTATCAATGGTGAAGATTCGTATGCAATACC TCAGCTTTGCGTACGCTTAAATACTTACCATCATATTAGAACACAGTTGGAGGTTTTAGAGAAGAGGACAGCCATTCAGCTGAGGAACTGTAAACCTAGT GATGTGGATGAGGATACTTTAAATAAGTTTGAGGTATCAGCTACTGCTTGTGTGGAAGGCGTTCAACAACTCTGCGAGGCAATGGCGTACAAGGTGGTTT TCCAGGATCTGAGTCCATTTATGTGGGATGGCCTCTATGTGGGAGATGTTTCATCTTCTAGAATCGACACTTTCCTGGAGGAGCTTGAGCAATATCTGGA AGTAATATCGTCTATGGTGCATGATCGAGTTAGGACACGTGCCATCAGTGATGTGATGAGAGCTTGTCTTGATGGCTTTCTGCTGGTGCTGCTTGCTGGA GCTACCAAATCAAAAGTTCCAGTGCCACCAACTACAGGTCAATGGAGCCCTAGTGATCCTAACACTCTGTTGAGAGTGTTGTGCTATAGAAATGACGAGA CAGCAACGAAATTCCTGAAGAAGATGTACAATCTGCCAAAGAAAGTTTAG
AA sequence Show only first row Show all	>Lus10012969 pacid=23158531 polypeptide=Lus10012969 locus=Lus10012969.g ID=Lus10012969.BGIv1.0 annot-version=v1.0 MKKITSSKQPSRQLQGPLPQLAILAQDISQLAFSEKAIFSPIFKRWHPHAAGVAVATLHSSYGKELNRFISSVSELTPDAIQVLSAADKLEKDLVQIAVE DAVDSEDGGKSIIQQMPPYEAEAAMANLVKSWIKTRVDRLKDWFDRNLRQEVWNPRANKERFAPSAVEVLRTVDETLEAFFFLPIPMHSVLLPELVVGLD RCLQNYILEAKSGCGNRNTYIPTLPALTRCSTGSKFHVFKKKEKSQMNQRGKSQIGTINGEDSYAIPQLCVRLNTYHHIRTQLEVLEKRTAIQLRNCKPS DVDEDTLNKFEVSATACVEGVQQLCEAMAYKVVFQDLSPFMWDGLYVGDVSSSRIDTFLEELEQYLEVISSMVHDRVRTRAISDVMRACLDGFLLVLLAG ATKSKVPVPPTTGQWSPSDPNTLLRVLCYRNDETATKFLKKMYNLPKKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25800			Protein of unknown function (D...		Lus10012969 [exp]	0	1
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	2.0	0.8538
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	2.2	0.8650
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	3.9	0.8498
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10005067 [exp]	8.9	0.8181
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	9.2	0.8276
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	10.0	0.8146
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	10.5	0.8341
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	11.6	0.8166
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	11.8	0.8371
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	12.0	0.8086

Compare expression of checked genes

Lus10012969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.