Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20010 503 / 7e-170 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 419 / 5e-137 Protein of unknown function (DUF810) (.1) AT2G33420 296 / 3e-90 Protein of unknown function (DUF810) (.1) AT1G04470 275 / 2e-82 Protein of unknown function (DUF810) (.1) AT5G06970 142 / 7e-36 Protein of unknown function (DUF810) (.1) AT4G11670 91 / 4e-19 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034947 [exp] 784 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10013392 [exp] 439 / 2e-151 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008430 [exp] 436 / 3e-150 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 271 / 7e-81 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 232 / 2e-67 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 154 / 4e-40 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 150 / 2e-38 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 71 / 2e-12 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 63 / 4e-10 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085900 [exp] 470 / 5e-157 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.006G238200 [exp] 456 / 2e-151 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 445 / 6e-147 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 294 / 2e-89 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 285 / 4e-86 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 140 / 2e-35 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 108 / 7e-25 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10012970 pacid=23158574 polypeptide=Lus10012970 locus=Lus10012970.g ID=Lus10012970.BGIv1.0 annot-version=v1.0 ATGTCTCGCGTTCCTGGTGGGCACAGCACCAGGAAGTCCACCTCCACGCGCCACCGTGCTCAACCAGTCTCCGCCGCCGTCTCCACCGCCACTGGGACCG CCACAGCTATGCCCGTTTTCCCAGTTGATCAGTTGGGTTCCCCCTTTGGCGATGAAGCGTCCTCCCCTCTCTACTTATCCGCCTCGGAGCTCCGGGAGTC TGCTTACGAGATCCTAATCGCAGCTTATCGGAGCTCCGGGACCCGCCCACTCACATACACCCCTCAGTCGGAGAGAACTGCTGCTGCTAATAATAATACT TCGATTCTAGCGCATTCCCCATCGCTGCAGAGGTCGTTGACCACGTCGGCGGCGAGTAAGGTCAAGAAGGCGCTCGGGATGAAATTGGGTTCTTCCAAGA GGAGAGCCGCCGCCCGAGATGATGAATCGGCAGGTCAGGATAGAACCAAAAAAGTTGCGACGGTCGGCGAGTTGGTTAGAGTCCAGATGAGAGTTTCGGA GCAGGCTGATTCCAGGATCCGACGAGCTCTCTTGCGAGTCGCTGCTGGCCAGCTAGGAAGGCGCATAGATTCGATGGTTTTGCCACTTGAGTTGTTGCAG CAGCTTAAGTCATCTGATTTCCCTAACCAGCAAGATTACGAAGCTTGGCAGAAGAGGATTTTGAAGCTTTTAGAAGCTGGACTACTAATCTATCCTCGCA TACCGCTCGATAAATCGGACACTGCTGCAAGACGGTTTCAGCAGGTTATCCGTGGGGCATTGAACAAGCCCCTTGAAACTGGTAGGAACACCGAGTCGAT GCAGATTCTGCGGAATGTAGTTATGTCTTTGGCTTGTCGATCATCGAATGGATCTGCTGCCGAAACTTGCCACTGGGCAGATGGGTTTCCTTTGAATCTG AGACTTTATCAAACACTACTGGAGACATGCTTTGATGTTAGTGATGAATCGGTTGTTATTGATGAAGTGGATGAAGTTATAGAACTTATAAAGAAGACCT GGGCGATTCTCGGAGTGAACCAGACATTGCATAACGTCTGTTTTTTGTGGGTTTTGTTCCATCGTTATGTTTCGACCGGTCAAATTGAAGATGACCTTTT GTTTGCTGCCAACAGTTTGATCATAGAGGTAGAGAAAGATGCCAAGGCGACTAAGGATCCGGAATACTCAAAGATCTTGAGTTCCGCGTTGAGTTCGATA CTGGAGTGGGCAGAGAAAAGGCTTATTGCTTACCATGATAGTTTCAATAGTGATAATACCGAATCAATGGAATGTGTTGCTTCTCTGGCTGTTTTGGCAG CAAAAGTACTTGTAGAAGACATCTCTAATGAGTACCGCAAGAGGAAACAAGTTGATATTGCTTGTGAGAGGACTGATACCTATATTCGATCTTCGATTCG TGCTGCTTTTAGCCAGGCAAGTTTCAGTTACCTTATTCTCTGA
AA sequence Show only first row Show all	>Lus10012970 pacid=23158574 polypeptide=Lus10012970 locus=Lus10012970.g ID=Lus10012970.BGIv1.0 annot-version=v1.0 MSRVPGGHSTRKSTSTRHRAQPVSAAVSTATGTATAMPVFPVDQLGSPFGDEASSPLYLSASELRESAYEILIAAYRSSGTRPLTYTPQSERTAAANNNT SILAHSPSLQRSLTTSAASKVKKALGMKLGSSKRRAAARDDESAGQDRTKKVATVGELVRVQMRVSEQADSRIRRALLRVAAGQLGRRIDSMVLPLELLQ QLKSSDFPNQQDYEAWQKRILKLLEAGLLIYPRIPLDKSDTAARRFQQVIRGALNKPLETGRNTESMQILRNVVMSLACRSSNGSAAETCHWADGFPLNL RLYQTLLETCFDVSDESVVIDEVDEVIELIKKTWAILGVNQTLHNVCFLWVLFHRYVSTGQIEDDLLFAANSLIIEVEKDAKATKDPEYSKILSSALSSI LEWAEKRLIAYHDSFNSDNTESMECVASLAVLAAKVLVEDISNEYRKRKQVDIACERTDTYIRSSIRAAFSQASFSYLIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	0	1
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	2.4	0.8971
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	3.2	0.9053
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	3.5	0.9033
AT1G22060			unknown protein		Lus10037927 [exp]	6.6	0.8902
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	6.9	0.8588
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10003393 [exp]	8.9	0.8624
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	10.2	0.8423
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	11.5	0.8341
					Lus10001135 [exp]	11.7	0.8335
AT5G42710			unknown protein		Lus10010806 [exp]	13.8	0.8841

Compare expression of checked genes

Lus10012970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.