Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68930 471 / 9e-157 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 459 / 9e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 454 / 1e-149 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 452 / 2e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 456 / 3e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 449 / 1e-148 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G09950 449 / 2e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 443 / 4e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G56690 437 / 5e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 434 / 3e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030908 [exp] 496 / 2e-160 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 486 / 7e-157 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004892 [exp] 464 / 3e-152 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 459 / 2e-151 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 459 / 6e-151 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 448 / 2e-147 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029436 [exp] 442 / 2e-146 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 445 / 1e-145 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 444 / 1e-145 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085800 [exp] 972 / 0 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 506 / 1e-170 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 474 / 4e-157 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 469 / 2e-156 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 470 / 6e-156 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 463 / 5e-152 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 456 / 1e-151 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 452 / 3e-150 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 456 / 2e-148 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 451 / 6e-146 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012971 pacid=23158519 polypeptide=Lus10012971 locus=Lus10012971.g ID=Lus10012971.BGIv1.0 annot-version=v1.0 ATGAAAGCCAATGGAGTGACGCTCCGCCAAGCAATAGACTCACTTTACGCCATCGGTCCAGCGACTCAAGAGTCCTATACTCGCCTTGTCCTGGAATGCT TTCGAGCCAACGATGCTGATCAAGCCAAGCGATTGCAGTCCCACATGGACACTTACTCATACCTCCCAACCGATTCTTTCCTCCAGAATCGCCTCCTCCA TCTCTACGCAAAATCCGGGCAGGTCTCCACTGCTCGACAACTGTTTGATAAAATGCCCCACAGAGACATTTTCTCCTGGAATGCTATGCTCTCGCTGTAT GCAAAATCCGGCTCAGTTCAGGATTTGCAAGGCGTTTTCGACAGGATGCCGTTCCGTGATTCCGTTTCTTATAACACTGTGATTTCTGGTTTGGCTGGAG GTGGCTGTCCAAGCAAGGCGCTTTCCGCATTTGTACGAATGCAAGAAGAGAGGGCCGTGGTAACAGGGTATACACTCGTGAGTGTTTTGAATGCTTGTAC GCAGTTGTTGGATTTGAGGAGAGGGAAACAGATTCATGGGAGGATTATCATTCGGGATTTTGGAGGTAACCCTTTTATTTTGAATGCCTTGACTGATATG TATGCAAAGTGTAGCGAGATTCTTGCGGCAAGGTGGCTCTTTGATAGGATGGCAAATAAGAACTTGGTGTCTTGGAATTCAATAATCTCTGGCTACTTGA AAAATGGGCAGCCTGGTAAATGCATTGATTTGGTTCGTGAGATGGAATTGTCTGGTTTGAAGCCTGATCAGGTTACACTTTCAAGTATACTCACTGCATA TTTTAAGAGTGGTTGCTTTGACCAAGCAGATAAAGTATTTCGGATGATCGGAGATAAGGATAAGGTCTGTTGGACAACTATGATAGTAGGTTATGCACAA AACCGGAAGGAAGAGGAAGCTCTGACGTTGTTTAACGAAATGATGTTAGCAAATGTTGAGCCTGATACTCATACTATCTCGTGTGTGGTTAGTTGCTGCG CTAAGTTAGCTTCACTGAGTCATGGCCAAGTTGTTCACGGTAGGGCTTTTCTGATGGGAGTTGATGATAACTTACTGGTTTCTAGTGCTCTTCTTGATAT GTACTGCAAATGTGGCGTCACAAAGGATGCATGGGTTATCTTCACAACGATGTCAACTCGAAATGTAGTTTCTTGGAATTCGATGATTGGTGGTTATGCT CAAAATGGACAGGATTCTGAGGCCTTAAACCTTTTCGAGAACATGTTGCTAGAAAATCTGAAACCAGATAATATTACCTTTGTGAGTGTGTTATCTGCTT GTAACCATGCTGGTTTGGTCAAAGAAGGCAAGAGATATTTCGGATCAATTACTGGAGTTCATGGCTTGTCTCCTACTTTAGATCATTATGCATGCATGGT TAATCTCCTTGGATGTCGGGGGAGTATCGATGAAGCTGTCGACCTGATTAATGGTATGCCCCACGAGCCGGATTCCCTGATTTGGTCTAGTCTCTTAAAC GTTTGTGCAGCCAAAAGTGACATCAAGTATGGGGAGATGGCTGCTAGGAAACTATTCGAACTGGATCCTCTAAATGCCGGTCCTTATGTCTTGCTGTCCA ATATTTATGCCGCTCGTGGAATATGGGAAGAAGTTGCTGCTCTGCGAAGCTTGATGAAGGCCAACAACGTGAAGAAATTTGCTGCGTACAGTTGGATCGA CATCAACAACAAAATCCACAAATTTGTAGCGGATGATCGGAGTCATGTCGATTCAGAAGCCATTTATAAGGAACTGAACAGTTTGATAAAGAAGCTTCAG GAATTTGGGTATAAACCTAATACAGGCTTGGTTTTACACGACGTAGGGGAACAAGAGAAATGTGAGTCCATCAGTTATCATAGTGAGAAACTTGCTCTTG CATTTAGTTTGATGAAAAAGCCTCATGAAGCTATGCCGGTAATGATATTGAAGAACATTCGTGTATGTGGTGACTGTCATACATTTATGAAGCTTGCATC TGAGGTGACGGGAAGGACCATCATTTTGAGAGATTCGAACAGATTCCATCATTTCGTCGGAGGGAAATGCTCTTGCAAGGATCACTGGTGA
AA sequence Show only first row Show all	>Lus10012971 pacid=23158519 polypeptide=Lus10012971 locus=Lus10012971.g ID=Lus10012971.BGIv1.0 annot-version=v1.0 MKANGVTLRQAIDSLYAIGPATQESYTRLVLECFRANDADQAKRLQSHMDTYSYLPTDSFLQNRLLHLYAKSGQVSTARQLFDKMPHRDIFSWNAMLSLY AKSGSVQDLQGVFDRMPFRDSVSYNTVISGLAGGGCPSKALSAFVRMQEERAVVTGYTLVSVLNACTQLLDLRRGKQIHGRIIIRDFGGNPFILNALTDM YAKCSEILAARWLFDRMANKNLVSWNSIISGYLKNGQPGKCIDLVREMELSGLKPDQVTLSSILTAYFKSGCFDQADKVFRMIGDKDKVCWTTMIVGYAQ NRKEEEALTLFNEMMLANVEPDTHTISCVVSCCAKLASLSHGQVVHGRAFLMGVDDNLLVSSALLDMYCKCGVTKDAWVIFTTMSTRNVVSWNSMIGGYA QNGQDSEALNLFENMLLENLKPDNITFVSVLSACNHAGLVKEGKRYFGSITGVHGLSPTLDHYACMVNLLGCRGSIDEAVDLINGMPHEPDSLIWSSLLN VCAAKSDIKYGEMAARKLFELDPLNAGPYVLLSNIYAARGIWEEVAALRSLMKANNVKKFAAYSWIDINNKIHKFVADDRSHVDSEAIYKELNSLIKKLQ EFGYKPNTGLVLHDVGEQEKCESISYHSEKLALAFSLMKKPHEAMPVMILKNIRVCGDCHTFMKLASEVTGRTIILRDSNRFHHFVGGKCSCKDHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10012971 [exp]	0	1
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10030026 [exp]	4.5	0.8587
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	4.9	0.8456
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	8.2	0.8694
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	8.7	0.8686
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	14.5	0.8602
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10002951 [exp]	19.7	0.8214
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	23.5	0.8471
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	26.3	0.8398
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	27.2	0.8304
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10021645 [exp]	30.4	0.8127

Compare expression of checked genes

Lus10012971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.