Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034949 [exp] 113 / 4e-31 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012972 pacid=23158544 polypeptide=Lus10012972 locus=Lus10012972.g ID=Lus10012972.BGIv1.0 annot-version=v1.0 ATGCATTTCCCCACCGCCGCCCAAGCCGCCAGTACTACTACTTCCTCCGCCGCCGCTTCCGACGACGACGGTAACATCAGCAACTGCTCCAACGTCGGCG CCTCCTCGACTTCTGCATGCTCCTCGTCGACAGAGGATCGTCATGACCCGTCCACGCCTTCCAGCGACAGCTCCAATACTGTCGCTGCTGCCGCTGCCGA GGCAGAGGAGCTGTGCCAGATCGTTGAGCTCCCGAAACTGGGATCTGAAGAGTTTGTATTGTACGGAGACTCGTGGCTGTGTAATGATGATCAGACATGG TACGCGGATTACGACGGCGTCGGAGTTGGAGGATACTACTTTAGCGACGAGACGAGGCATTTAGTGACGATGGGGGAAAGTAGCAGCAGCAACTGCGGCG GCTTTGGAGCATTTTTGTGTGGCAATATTAGTTAG
AA sequence Show only first row Show all	>Lus10012972 pacid=23158544 polypeptide=Lus10012972 locus=Lus10012972.g ID=Lus10012972.BGIv1.0 annot-version=v1.0 MHFPTAAQAASTTTSSAAASDDDGNISNCSNVGASSTSACSSSTEDRHDPSTPSSDSSNTVAAAAAEAEELCQIVELPKLGSEEFVLYGDSWLCNDDQTW YADYDGVGVGGYYFSDETRHLVTMGESSSSNCGGFGAFLCGNIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012972 [exp]	0	1
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10023074 [exp]	1.7	0.9232
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034949 [exp]	4.9	0.8944
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	7.1	0.8917
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	9.2	0.9098
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	16.2	0.9064
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	20.8	0.9030
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10005780 [exp]	23.9	0.8423
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	24.2	0.9002
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	24.2	0.8984
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10006168 [exp]	27.1	0.9010

Compare expression of checked genes

Lus10012972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.