Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19670 702 / 0 Exostosin family protein (.1) AT4G32790 556 / 0 Exostosin family protein (.1) AT5G25820 554 / 0 Exostosin family protein (.1) AT5G11610 509 / 6e-175 Exostosin family protein (.1.2) AT4G16745 478 / 7e-163 Exostosin family protein (.1.2) AT5G37000 468 / 8e-159 Exostosin family protein (.1) AT5G03795 316 / 2e-100 Exostosin family protein (.1) AT3G07620 290 / 1e-90 Exostosin family protein (.1) AT5G25310 286 / 2e-89 Exostosin family protein (.1) AT5G11130 280 / 1e-86 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034951 [exp] 1198 / 0 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 784 / 0 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 753 / 0 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 567 / 0 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 566 / 0 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 563 / 0 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 488 / 1e-166 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10043238 [exp] 473 / 8e-161 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10039142 [exp] 328 / 2e-104 AT5G03795 603 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085500 [exp] 783 / 0 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 608 / 0 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 590 / 0 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 580 / 0 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 552 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 483 / 6e-165 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 332 / 1e-106 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 320 / 1e-101 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 311 / 5e-99 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 303 / 8e-96 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10012973 pacid=23158571 polypeptide=Lus10012973 locus=Lus10012973.g ID=Lus10012973.BGIv1.0 annot-version=v1.0 ATGGAGTTCCATCTTCGACTACCGAAGTTCAATCAAATCGAGTCGAAAAAATGGCTCATCTTTGTAGTTGCAATCACCATCGCTCACTTATTGTTTCAAC CTTTATTGTTTCCATATGGCTACAACATTCGGTCTCTCTTGCCAACTGCCAATCATTCCATGTTTGATCAAAGCGGGATGATTGCAACTGCAGCGGAGCA ATCTTCAGTAAAGCCTGGTATATCTCGTAATGCTTTAGCAGTTGATTCCTCAAGCTCCACTTCCAGTTTGAAGATTGATTTTATTTTGAGAAATGACAAT AAATCCGATAGCTCTGGAGACATAAGTCATGTCAGTGAAGCGAAAGGACATGACCAAGATACAGATGAGGAAGAAGAAGAAGACCTGGATGATGGACCGG CTGAACTTGCCGTGGATAGAGATGTCGCTGATGATGATGAGGTTTCCCTCAAAAGGAGTTCTATTCTAGAGTTTCCAAGTGAAGCAAGAAAGGCCCTCCC TCTTTATAAAAATGCGACAATTAAGAGCAGTGAAGAAGAAACAAATGTTTCAAGGGCAGTTCCTAAAAGTCCAAGTTCCGTATTTGAAGCTCCACCAGTT AATTCTCAAGCAGTACCTGGAACAACCATTGATGCCCCTTTGGAAGCAAATGAAAAATCCTCTGTATTTCCTGCAGTGGTGAAAGGTGCTTCTATTGTTT CAAGAGATAAAAATGGTAGAGCTAGAAGCCCTGTGAAGAAACAGACGAAGTCTGAGATGCCGCCAACATCAATTACAACGATCGACGAGATGAATGATTT GCTAGCACACCATCGTCGTTCTTCACGAGCTATGAGACCGAGATGGTCATCTGTACGTGATCAGGAGATTTTAGCTGCAAGGTCAGAGATTGAAAATGCA CCTCTACTCGTGAATGATCAAGATCTATATGCTCCGCTCTTCCGAAATGTGTCCCAGTTCAAAAGGAGTTATGAGCTCATGGAACGCACACTCAAGGTCT ACATTTATAAGGATGGAAAGAAACCAATCTTCCACGTGCCAATATTAAAGGGATTGTATGCTTCAGAGGGATGGTTTATGAAACTGATGCAGGGAAGTAA GCAATTTGTTGTCAAGGATCCACAAAAGGCTCACTTGTTCTATATGCCATTCAGTTCCCGAATGCTAGAGTACAGTCTCTACGTCCGGGATTCACATAAC AGAACAAATCTACGTCAGCATCTAAACGAATATACGGAAAAGATTGCTGCTAAATATCCTTACTGGAACCGAACCGGCGGAGCAGACCATTTTCTTGTCG CATGCCATGATTGGGCTCCTTACGAGACCAGACAACATATGGACCATTGTATTAAAGCTCTCTGCAATGCTGATGTGACAGTAGGTTTCAAACTCGGGAC TGATGTATCTCTTGCAGAGACGTTCATCAGAGCAGCTAGAAATCCTCTCCGCGGCCTTGGAGGTAAACCACCTTCACAAAGACACATCCTTGCCTTCTAT GCTGGAGGAATGCATGGATATCTTCGTCCGATTTTAGTCAAGCAGTGGAAAGATAAGGACCCGGATATGAAGATCTTTGGTCCTATGCCCGCGTCGAGCA AAATGAACTATATCCAGCACATGAAGAGTAGCAAATACTGTATATGCCCCAAGGGTTTTGAGGTTAACAGCCCACGAGTTGTGGAATCGATATTCTACGA ATGTGTCCCTGTTATCATATCGGACAACTTCGTGCCACCTCTGTTTGAGGTCTTCGATTGGAAGGCCTTCTCGGTTATCCTCCCGGAGAAGGACATTCCC AACCTGAAGCAGATTCTGGTGTCGATACCGGAAAAGCGATACATTGAGCTGCAAGTTGCGGTCAGGAAAGTTCAAAAGCATTTCCTTTGGCATGCAAGGC CTGTGAAGTTCGATCTCTTTCACATGACCCTTCATTCGATTTGGTACAATCGTGTTTATCAGATGAAACCACGATGA
AA sequence Show only first row Show all	>Lus10012973 pacid=23158571 polypeptide=Lus10012973 locus=Lus10012973.g ID=Lus10012973.BGIv1.0 annot-version=v1.0 MEFHLRLPKFNQIESKKWLIFVVAITIAHLLFQPLLFPYGYNIRSLLPTANHSMFDQSGMIATAAEQSSVKPGISRNALAVDSSSSTSSLKIDFILRNDN KSDSSGDISHVSEAKGHDQDTDEEEEEDLDDGPAELAVDRDVADDDEVSLKRSSILEFPSEARKALPLYKNATIKSSEEETNVSRAVPKSPSSVFEAPPV NSQAVPGTTIDAPLEANEKSSVFPAVVKGASIVSRDKNGRARSPVKKQTKSEMPPTSITTIDEMNDLLAHHRRSSRAMRPRWSSVRDQEILAARSEIENA PLLVNDQDLYAPLFRNVSQFKRSYELMERTLKVYIYKDGKKPIFHVPILKGLYASEGWFMKLMQGSKQFVVKDPQKAHLFYMPFSSRMLEYSLYVRDSHN RTNLRQHLNEYTEKIAAKYPYWNRTGGADHFLVACHDWAPYETRQHMDHCIKALCNADVTVGFKLGTDVSLAETFIRAARNPLRGLGGKPPSQRHILAFY AGGMHGYLRPILVKQWKDKDPDMKIFGPMPASSKMNYIQHMKSSKYCICPKGFEVNSPRVVESIFYECVPVIISDNFVPPLFEVFDWKAFSVILPEKDIP NLKQILVSIPEKRYIELQVAVRKVQKHFLWHARPVKFDLFHMTLHSIWYNRVYQMKPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	0	1
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	1.0	0.8894
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	2.8	0.8626
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	5.1	0.8879
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	6.3	0.8564
AT3G12590			unknown protein		Lus10001698 [exp]	6.5	0.8464
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	7.3	0.8692
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	7.7	0.7915
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	7.7	0.8247
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	8.4	0.8253
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	9.6	0.7740

Compare expression of checked genes

Lus10012973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.