Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20020 481 / 3e-162 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 350 / 4e-113 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 254 / 4e-78 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 241 / 5e-74 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 52 / 2e-06 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G29750 45 / 0.0001 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G18390 44 / 0.0004 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 43 / 0.0008 ATCFM3A CRM family member 3A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011119 [exp] 565 / 0 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 564 / 0 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 529 / 0 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 342 / 7e-110 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 333 / 2e-104 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 257 / 3e-79 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 243 / 2e-74 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10036545 [exp] 231 / 7e-70 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10019623 [exp] 190 / 3e-56 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163100 [exp] 547 / 0 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 365 / 4e-119 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G074400 [exp] 262 / 3e-81 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 258 / 1e-80 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 54 / 5e-07 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 49 / 1e-05 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 44 / 0.0003 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.017G116700 [exp] 43 / 0.0006 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10012974 pacid=23158548 polypeptide=Lus10012974 locus=Lus10012974.g ID=Lus10012974.BGIv1.0 annot-version=v1.0 ATGGCGCTGAAACTCCAATTTCCATTCCCAATTTCCGCTCCACCGCACCGTAACCCGTTATCTTCCCATCCCTGCCACAGCCGCCGTCCTTCCACCGAAC TCCACCTCTCGCAGTGGAGCAATGCCAACCACACAGAATTCAAGGAACGGCAGCGCTCGATGAAGGAGGACGACAACCGTCAAGCCAGGAGCAGACCGTC GGTTTCCGGTCGGAGATCCAATTCCTCCAAACCCCATGAGCCGAAAACCGATCACCCAGCCTTTCGGCAGATTGCAAAGTTATCCAAAAGGACCCATCCC ATCGACCGGACGGCTGACGTCAAGCTAAGCGAAGACGGGTTATCTTACGTCGTCGACGGAGCGCCGTTCGAGTTCAAATACAGCTACACGGAGGCTCCCA AGGGGAAGCCTCTTAAGTTACGGGAGCCGCCGTTTTCGCCGTTTGGTCCCGTGACGATGCCGCGGCCATGGACTGGAAGACCTCCGCTGCCTACTAGTAA ACACAAGTTGAAAGAATCGGATCCGTTTCAGCCAACCCCGCCGCCGGTTCAATCGCCAGGTCCCGTGTTTGTGAAAACGAGGGAGGAGGTGTTGGGGGAT CCATTGACTAAGGAAGAAATCACGGCTTTGGTTGGAAGTAGCATCAAGTCGGAACGGCAATTGAATATGGGGAGAGATGGTTTAACCCACAACATGCTTG ATAATATTCATTCTCACTGGAAGCGTAAGAAAGTCTGCAAGATCAAGTGCAAAGGAGTTTGTACTGTTGATATGGACAATGTCTGCCACGAACTCGAGCA AAGGAGTGGAGGGAAGATCATTTACACGAGAGGAGGAGTGGTGTATCTTTTCCGAGGCAGAAACTATAAGTACAAAACTCGGCCGCAGTTTCCTCTCATG TTATGGAAGCCTGCTGCACCTGTGTATCCACGGCTGATCGAGCAGGCTCCAGCTGGTCTAACTCTGGATGAGGCCTCTCAGATGCGTTACAAAGGCCGAA GCTTGATACCCATGTGCAAACTAGGCAAAAATGGCGTGTACTCCAATTTGGCTGATGATGTCAGGGAAGCTTTTGAAGAGTGTGAATTGGTTAGAATCAA TTGTGAAGGGATGAACCGAAGTGATTATCGGAAAATCGGTGGCAAGTTGAAGGATCTTGTTCCATGTGTGCTGATTTCATTTGAAAATGAGCACATCTTG ATGTGGAGGGGAAGGGACTGGAAGTCCTCCTTCACTAAACCGACGAGTATCGATCAGCAAAATCAAGGTTCTTCTGTTCAACCAGAAGACCGAAAACTAC CAGAAAGGAACATGTCCCAGTTGGTGTCCGAAGAACAAGCAGTAATTGCAAATACTGCAGAATATTATGTACCATCTAATGCTGTTCCAGCCGAAGTCGA CATCGACAAAACTGAAGCTACAATCGACAGTTCCGATGTTAAATTAGTAAGCTTGGAACAAGTCGTTGCAGAGGAAACCAGCCATCGCCATCCAAGGGAA CCGGCAGACTTGAGCTTGCCATGTATGCAGGGAGTTGTAAAGCTATTGAACCAAGCTTTTGAAATTGGGAGTGCTACTCCATTGGAAGGCGAGGGCTTGG ATCCTGAGACCATCTATAAGAGAACAGTTGCCTTCTCCAGGTCAGCTCCTGAAAGCCCAGTGTTCCAGTATGGGAGGCCGAAGATGGAATCAGTCGAGGG AAACACCAAGGAAAAGGAAATGGTGGTAGCTTCTGGGGATAATGAAGTTGCTCGTCCAGTTGCTCCTCCCAAGAGAGAAAGGGCTGAGAGAAGAAGTTCA AGATTTGAAAGGAAGAAAGATGAACCATTAGAGTTGGTGGGTGGAGGAGTGGTTGTTGAGAAAACCTTGGGGGTAGATGAACTTGCCAAGCTGCTGGCAT AA
AA sequence Show only first row Show all	>Lus10012974 pacid=23158548 polypeptide=Lus10012974 locus=Lus10012974.g ID=Lus10012974.BGIv1.0 annot-version=v1.0 MALKLQFPFPISAPPHRNPLSSHPCHSRRPSTELHLSQWSNANHTEFKERQRSMKEDDNRQARSRPSVSGRRSNSSKPHEPKTDHPAFRQIAKLSKRTHP IDRTADVKLSEDGLSYVVDGAPFEFKYSYTEAPKGKPLKLREPPFSPFGPVTMPRPWTGRPPLPTSKHKLKESDPFQPTPPPVQSPGPVFVKTREEVLGD PLTKEEITALVGSSIKSERQLNMGRDGLTHNMLDNIHSHWKRKKVCKIKCKGVCTVDMDNVCHELEQRSGGKIIYTRGGVVYLFRGRNYKYKTRPQFPLM LWKPAAPVYPRLIEQAPAGLTLDEASQMRYKGRSLIPMCKLGKNGVYSNLADDVREAFEECELVRINCEGMNRSDYRKIGGKLKDLVPCVLISFENEHIL MWRGRDWKSSFTKPTSIDQQNQGSSVQPEDRKLPERNMSQLVSEEQAVIANTAEYYVPSNAVPAEVDIDKTEATIDSSDVKLVSLEQVVAEETSHRHPRE PADLSLPCMQGVVKLLNQAFEIGSATPLEGEGLDPETIYKRTVAFSRSAPESPVFQYGRPKMESVEGNTKEKEMVVASGDNEVARPVAPPKRERAERRSS RFERKKDEPLELVGGGVVVEKTLGVDELAKLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	0	1
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	3.3	0.8500
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10035653 [exp]	3.7	0.7555
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	4.0	0.8011
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	4.2	0.8198
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	5.5	0.7953
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	6.0	0.7757
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	6.8	0.8213
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	7.7	0.7944
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	9.5	0.7830
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	14.1	0.7677

Compare expression of checked genes

Lus10012974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.