Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20030 253 / 1e-80 RING/U-box superfamily protein (.1) AT4G28890 251 / 2e-79 RING/U-box superfamily protein (.1) AT5G05810 132 / 1e-34 ATL43 RING/U-box superfamily protein (.1) AT4G40070 110 / 2e-27 RING/U-box superfamily protein (.1) AT3G05200 110 / 2e-26 ATL6 RING/U-box superfamily protein (.1) AT5G17600 108 / 2e-26 RING/U-box superfamily protein (.1) AT1G72200 103 / 3e-24 RING/U-box superfamily protein (.1) AT2G35000 102 / 8e-24 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT4G09120 101 / 1e-23 RING/U-box superfamily protein (.1) AT1G35330 99 / 4e-23 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034953 [exp] 586 / 0 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10009511 [exp] 220 / 8e-68 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10011702 [exp] 214 / 4e-65 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10023617 [exp] 131 / 2e-34 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10004460 [exp] 108 / 7e-26 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 107 / 1e-25 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10013618 [exp] 103 / 6e-25 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10029178 [exp] 104 / 1e-24 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10041134 [exp] 104 / 2e-24 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085001 [exp] 332 / 9e-111 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 236 / 5e-74 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 218 / 1e-66 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 170 / 3e-48 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 113 / 9e-28 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 110 / 7e-27 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 109 / 3e-26 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 104 / 8e-25 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 101 / 2e-24 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 101 / 3e-23 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10012975 pacid=23158580 polypeptide=Lus10012975 locus=Lus10012975.g ID=Lus10012975.BGIv1.0 annot-version=v1.0 ATGTTCGCCGGAGATAGACAAGTCAGTCCGGCACGATCAAAAGTTTACGTTGACTTTCACTTTTATTCCCCTTTTCAGATGTACCCCTTCGCCTTCTTCC CCATCCTCCTCCTCCACACCCTCGGAGCCTTCGTCGTTGAAGCGCAGCCGAGCATAACCCAGGAGTACACCGCTCCGACCTCGTCGCAGGGCACGGTGAA TAACTTCCAGCCAAGCTTGGCGGTAGTAATCGGAATCCTAAGCATAATGTTCTCCGTAACATTTATCCTCCTAATCTACGCAAAGTTCTGCCACCGGGGA GGATCCTCCGCCGCACACGCAGACTTGCTCCGCCGCCAAGGCGGGCTAGTCCGGTCAGCGTCCCGTTTCTCCGGGATTGATAAAACCGTCATCGAATCGC TCCCGTTCTTCCGATTCTCCTCCCTCCGAGGAAATAGGGAAGGTCTGGAGTGCGCTGTATGCATCTCGAAATTCGAGGATGTTGAGATCCTGAGACTGCT ACCGAAATGCAAGCACGCTTTCCACATCAATTGCATCGATCAGTGGCTGGAGAGACATTCCAGCTGTCCGATTTGCAGGGCGAAAGTCAACGCTGATGAC CCCACCATCTTCGCCTACTCCAATAGCATGCGTATGATGTGGAGCCAGTCAGGGCGCGGAGGAGGAGAAGGATCGGAATCCATGGCTGCTGAGGAGCGTG GGCAGGAATTGGGGCTTTTCATTGAGAGAGAAGAGAGTGGTCGAAGGTCGTCGTCGAGGTTCAGCGTCGGTAAATTAGGGAGGAGCGGGAGAAAAGACGA AGAAAATCAGGAAGCTCCGATTCTGGAGGAGGATGGGGAAGAAATTGGGGGTAATTACGATAAGTTCAAGCACAGGATTGTAGTGTCGGATGTTGTGTTT AAGAACCGGTGGAGTGGCGTGACGTCGTCGGATTTGATGTTTCTGAGCTCGGAGATGTTAATCGATGAAGTCTCGGGAGCGGCGGCGGGAGTTGGAGACC AGATGCCGTCGACGTCGAGTAATGTAAATTGTTCGAGGGAGATTGCGAATTCGGCGCCAGCGGATAGAAGATCGGTATCGGAGATGAGTGGGGTGTCGAG ATTGAGGAGTATGGAATGGGCGGCAGCGGGGAGGAATGCGGGGGAGGAAGAGAGGAGGCGGAGGCTGTGGTTTCCGATCGCGAGAAGAACGGCGGAGTGG TTTGCAAACAGGGAGAGGCGGAGTATAGTAGCAGACCGGTAG
AA sequence Show only first row Show all	>Lus10012975 pacid=23158580 polypeptide=Lus10012975 locus=Lus10012975.g ID=Lus10012975.BGIv1.0 annot-version=v1.0 MFAGDRQVSPARSKVYVDFHFYSPFQMYPFAFFPILLLHTLGAFVVEAQPSITQEYTAPTSSQGTVNNFQPSLAVVIGILSIMFSVTFILLIYAKFCHRG GSSAAHADLLRRQGGLVRSASRFSGIDKTVIESLPFFRFSSLRGNREGLECAVCISKFEDVEILRLLPKCKHAFHINCIDQWLERHSSCPICRAKVNADD PTIFAYSNSMRMMWSQSGRGGGEGSESMAAEERGQELGLFIEREESGRRSSSRFSVGKLGRSGRKDEENQEAPILEEDGEEIGGNYDKFKHRIVVSDVVF KNRWSGVTSSDLMFLSSEMLIDEVSGAAAGVGDQMPSTSSNVNCSREIANSAPADRRSVSEMSGVSRLRSMEWAAAGRNAGEEERRRRLWFPIARRTAEW FANRERRSIVADR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20030			RING/U-box superfamily protein...		Lus10012975 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	1.4	0.9633
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	6.7	0.9283
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	7.5	0.9276
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	8.0	0.9319
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	8.4	0.9214
AT5G65030			unknown protein		Lus10014339 [exp]	11.2	0.9238
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	11.8	0.9180
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	12.0	0.9200
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	13.0	0.9238
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018100 [exp]	14.2	0.8971

Compare expression of checked genes

Lus10012975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.