Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20050 1269 / 0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT3G06270 292 / 5e-91 Protein phosphatase 2C family protein (.1) AT1G45160 142 / 3e-34 Protein kinase superfamily protein (.1.2) AT3G23310 139 / 4e-34 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G08720 135 / 1e-33 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 134 / 2e-33 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT2G20470 135 / 4e-33 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 132 / 3e-32 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT1G03920 132 / 8e-32 Protein kinase family protein (.1) AT5G62310 134 / 1e-31 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034955 [exp] 1731 / 0 AT2G20050 1472 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10041242 [exp] 301 / 3e-93 AT3G06270 508 / 1e-180 Protein phosphatase 2C family protein (.1) Lus10034009 [exp] 295 / 7e-91 AT3G06270 506 / 5e-180 Protein phosphatase 2C family protein (.1) Lus10012768 [exp] 290 / 7e-89 AT3G06270 502 / 2e-178 Protein phosphatase 2C family protein (.1) Lus10021952 [exp] 238 / 2e-70 AT3G06270 447 / 2e-157 Protein phosphatase 2C family protein (.1) Lus10011814 [exp] 139 / 3e-34 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 138 / 3e-34 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10025213 [exp] 135 / 2e-32 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10001604 [exp] 132 / 3e-31 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084900 [exp] 1388 / 0 AT2G20050 1461 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Potri.008G198700 [exp] 305 / 6e-95 AT3G06270 481 / 1e-170 Protein phosphatase 2C family protein (.1) Potri.010G028300 [exp] 304 / 1e-94 AT3G06270 498 / 4e-177 Protein phosphatase 2C family protein (.1) Potri.005G226700 [exp] 138 / 5e-34 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.008G167800 [exp] 138 / 6e-34 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 137 / 1e-33 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G263000 [exp] 137 / 8e-33 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G109600 [exp] 133 / 1e-32 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.002G036200 [exp] 133 / 2e-32 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G342000 [exp] 133 / 1e-31 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012976 pacid=23158516 polypeptide=Lus10012976 locus=Lus10012976.g ID=Lus10012976.BGIv1.0 annot-version=v1.0 ATGAGCGGGACGACGGCGATTACGGTTTTGGTGCGGGGTAGGACGATATATGTGGCGAATACTGGCGATTCAAGGGCGGTGATAGCTGAGAAGAAAGGGA AGGAACTCGTGGCTGTGGATTTGTCGATAGATCAGACTCCCTTTCGAGCTGATGAACTCGAGCGAGTCAAGCTCTGTGGAGCTAGGGTGATGACATTGGA TCAGATTGAAGGGCTTAAGAATCCCGAGGTCCAGTGTTGGGGAACTGAGGAAGCTGATGATGGTGATCCCCCCAGGTTGTGGGTTCCCAATGGAATGTAT CCTGGTACTGCATTTACCAGAAGTATTGGTGATTCCATTGCGGAGACCATTGGGGTTGTTGCGAATCCGGAAATTGTAGTTCTGGAGCTCTCAGCTGAAC ATCCTTTCTTTGTGCTTGCTAGTGATGGTGTTTTTGAGTTCCTCTCAAGTCAGGCCGTGGTTGACATGGTTGCAAAATATAAAGATCCTCGGGATGCTTG TGCTGCAATTGTTGCCGAATCTTATCGCCTTTGGCTACAATACGAAACTCGCACAGATGATATTACTATAATAGTAGTACATATTAATGGTCTGACTCAT AATTCGGTTGATCCCTTAACAACTTCAGTTGGAGCGCAGCATGCTGTCCCTCATGTTGTGGAGGTGACAGGAGCTGAATCTCCGTCAACCTTTGGATGGA ATTCTAAAAACCAACGTGTAAGGCATGATTTATCTCGAGCGCGTATTCGTGCCATTGAAAGTTCACTTGAGAACGGCCAAGGTTGGGTTCCTCCTTCTCC AGCGCACAGGAAAACCTGGGAAGAAGAAGCACAAATAGAGAGGGCACTGCGTGAGCATTTCCTTTTCAGAAAGCTTACTGATTCTCAGTGTCAAGTTTTA TTGGACTGCATGCAAAGAGTTGAGGTCCAACCAGGGGAGATTATAGTTAAGCAGGGTGGTGAAGGTGATTGCTTTTATATCGTCGGCAGTGGGGACTTTG AAGTTTTTGCTACCCAGGAAGAGAAATACGGAGAGGTGCCAAAGGTTTTGCAGCACTACTCTGCTGAGAAGTTATCATCATTCGGAGAGCTAGCGTTAAT GTACAATAAGCCACTTCAGGCTTCCGTCCGTGCTGTGACGAGTGGGACGGTATGGGCGCTGAAAAGAGAGGATTTTCGTGGTATCCTGATGTCAGAGTTT TCTAATTTGTCATCCTTGAAGCTACTTCGTTCCGTAGATCTTCTGTCAAGATTAACTATCTTGCAGCTGAGTCAGATAGCTGATTCGCTTTCTGAAGTAT CATTCTCCGATGGACAAATTATAGTCAACGAGAGCGAGGGGATCTCTGCTTTGTATGTCATACAGAAAGGAAGAGTGCGGCTTACTTTTGAAAGTGAATT GTTGAATTACTCAAACGTTTGCAGTCTGAAGTCTGACAGTGGAACAGAGGATAATGATATGCAAAGTGGTAAAATGGTCTCAATGGAGAAAACAGAAGGA AGCTATTTTGGAGAATGGACACTACTTGATGAAGAGATCGGTAGTGTGAGTGCAGTTGCTGTGGGCGATTGTGTTTGTTCTGTGTTAAGCAAGGAGAACT TTGTTTCAGTAGTTGGTCCTTTAGCAAAACTCGTGCAGGATTGTGCCAAGTCAAGTGGCTCTTCTTCTGATGTTCTTACCGAATCTGCTGAAAGTACTGG TATTTCTGCTTCTCCTAGAGTTCAAATATCTGAACTGGAGTGGAAGAGATGCTTGTACACCACTGACTGCAGTGAAATTGGGCTTGTGCAGCTGAGAGAC TCAGGACAATTGCTCAGTCTGAAAAGGTTTTCCAAACAGAAGATCAAGAAACTGGGAATGGAAGTACAAGTTTTGAAAGAGAAAAATCTAATGAAGAGTA TGCTTCCTTCAGCATTTGTTCCACGGATTTTAAGTACATGTGCAGATAGAGAACATGCAGCCATAGTATTGAATGCATGCCTCGCTTGTCCTTTATCATC CATACTTCACACGGCACTTGATGAACCTTGTGCGCGGTTTTGTGGTGCCTCAGTCGTAGTTGCTTTAGAGGATCTACATAAGGACGGAATAATCTACAGA GGAGTGTCCCCAGATGCCCTGATGTTGGATAACGCAGGATATCTGCAGTTAGTAGACTTCAGATTTGGGAAGAAGCTGTCTGGTGAGAGGACATTTACAA TATGCGGAACGGCAGACTCATTAGCTCCAGAGATTATTAACGGAGAAGGGCATGGTTTCCCCGCTGACTGGTGGGCTCTTGGGGTCTTGATCTACTTCAT GCTACAGGGAGAAATGCCGTTCGGGTGTTGGAGAGAGAGTGAAGTTGACACTTGCGCAAAGATTACAAAAGGACAACTCACTCTTCCTTCAACTCTCAGC CCTGAAGCAGCAGATCTTATCTCTAAGCTACTTGAAGTTGAAGAGAACAAGAGACTTGGGAGTCAAGATCCCGATTCCATAAAGGCTCATCCATGGTTTA GTGGTGTAGACTGGGAAGGAATGAGGGAAAAGAGCCTTCCCGTTCCAGATGAAATAGCTTTTCGAGTCGCACACCATGTTCAAACCTGCTCTCCGCCGGA TTACAATGCTGCTGCTGCTCCTTCTTCGTCGCCTTGTCGAGATGTGGAAGATCTGAATGTTCCAGAATGGCTGAATGATTGGTAG
AA sequence Show only first row Show all	>Lus10012976 pacid=23158516 polypeptide=Lus10012976 locus=Lus10012976.g ID=Lus10012976.BGIv1.0 annot-version=v1.0 MSGTTAITVLVRGRTIYVANTGDSRAVIAEKKGKELVAVDLSIDQTPFRADELERVKLCGARVMTLDQIEGLKNPEVQCWGTEEADDGDPPRLWVPNGMY PGTAFTRSIGDSIAETIGVVANPEIVVLELSAEHPFFVLASDGVFEFLSSQAVVDMVAKYKDPRDACAAIVAESYRLWLQYETRTDDITIIVVHINGLTH NSVDPLTTSVGAQHAVPHVVEVTGAESPSTFGWNSKNQRVRHDLSRARIRAIESSLENGQGWVPPSPAHRKTWEEEAQIERALREHFLFRKLTDSQCQVL LDCMQRVEVQPGEIIVKQGGEGDCFYIVGSGDFEVFATQEEKYGEVPKVLQHYSAEKLSSFGELALMYNKPLQASVRAVTSGTVWALKREDFRGILMSEF SNLSSLKLLRSVDLLSRLTILQLSQIADSLSEVSFSDGQIIVNESEGISALYVIQKGRVRLTFESELLNYSNVCSLKSDSGTEDNDMQSGKMVSMEKTEG SYFGEWTLLDEEIGSVSAVAVGDCVCSVLSKENFVSVVGPLAKLVQDCAKSSGSSSDVLTESAESTGISASPRVQISELEWKRCLYTTDCSEIGLVQLRD SGQLLSLKRFSKQKIKKLGMEVQVLKEKNLMKSMLPSAFVPRILSTCADREHAAIVLNACLACPLSSILHTALDEPCARFCGASVVVALEDLHKDGIIYR GVSPDALMLDNAGYLQLVDFRFGKKLSGERTFTICGTADSLAPEIINGEGHGFPADWWALGVLIYFMLQGEMPFGCWRESEVDTCAKITKGQLTLPSTLS PEAADLISKLLEVEENKRLGSQDPDSIKAHPWFSGVDWEGMREKSLPVPDEIAFRVAHHVQTCSPPDYNAAAAPSSSPCRDVEDLNVPEWLNDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	0	1
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	1.4	0.9007
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	1.4	0.8716
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028693 [exp]	3.7	0.8424
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10015118 [exp]	4.9	0.8442
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	6.0	0.8581
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	8.7	0.8538
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	9.7	0.8495
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	11.2	0.8250
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022472 [exp]	11.9	0.7833
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	14.7	0.8288

Compare expression of checked genes

Lus10012976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.