Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19570 139 / 4e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084400 [exp] 117 / 9e-35 AT5G19570 111 / 3e-32 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF10639 [flax] [poplar] TMEM234 Putative transmembrane family 234
Representative CDS sequence Show only first row Show all	>Lus10012977 pacid=23158583 polypeptide=Lus10012977 locus=Lus10012977.g ID=Lus10012977.BGIv1.0 annot-version=v1.0 ATGACCGGTGGCGTGGAGAAAATGGTAGCGGTTGGCCTAATCTGGGGCGCCACGAATGCTCTGATCCGTCGCGGGGCTCTGCTTTATGACAAGACATCTC TAGGATCTCCCTCCCCCGCCGCCGTCGCACCAACCTCGATCCAAACGAAGCTCATCTCTTCCTTCAAAAGTTTAATCAGCCTGCTCTTGTTCTGGCAGTA TTCCCTTCCTTTCTTGCTCAACCTCTCAGCCTCTGCTACTTTCTTCGCTCTACTAAGCGACGCCCCTATTTCCCTCGCCGTCCCCGTCACCAACGCCACC ACTTTCGCCGTCACCGCCGTCTTTGGTATGCTGCTAGGTGAAGAAACTCGAATTGGTTTCGCATTGCTCGGCACTGCTTTTATTGTGGCTGGAATTTGGC TTTGTATCACCTAG
AA sequence Show only first row Show all	>Lus10012977 pacid=23158583 polypeptide=Lus10012977 locus=Lus10012977.g ID=Lus10012977.BGIv1.0 annot-version=v1.0 MTGGVEKMVAVGLIWGATNALIRRGALLYDKTSLGSPSPAAVAPTSIQTKLISSFKSLISLLLFWQYSLPFLLNLSASATFFALLSDAPISLAVPVTNAT TFAVTAVFGMLLGEETRIGFALLGTAFIVAGIWLCIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19570			unknown protein		Lus10012977 [exp]	0	1
					Lus10037253 [exp]	2.2	0.8918
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	3.7	0.8852
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039437 [exp]	5.2	0.8784
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10037129 [exp]	5.7	0.8783
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	9.9	0.8528
AT2G27260			Late embryogenesis abundant (L...		Lus10043411 [exp]	13.0	0.8511
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10011434 [exp]	16.7	0.8608
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	18.3	0.8766
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037339 [exp]	20.2	0.8243
AT3G44610			Protein kinase superfamily pro...		Lus10006272 [exp]	20.7	0.8515

Compare expression of checked genes

Lus10012977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.