Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28850 359 / 3e-125 ATXTH26, XTH26, XTR18 xyloglucan endotransglucosylase/hydrolase 26 (.1) AT4G25810 305 / 6e-104 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57560 302 / 4e-103 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57530 302 / 5e-103 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT3G23730 301 / 1e-102 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G57550 298 / 1e-101 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57540 295 / 4e-100 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT4G14130 295 / 4e-100 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT4G25820 289 / 9e-98 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT5G48070 286 / 1e-96 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011112 [exp] 493 / 4e-178 AT4G28850 365 / 1e-127 xyloglucan endotransglucosylase/hydrolase 26 (.1) Lus10043232 [exp] 344 / 8e-119 AT4G28850 241 / 3e-78 xyloglucan endotransglucosylase/hydrolase 26 (.1) Lus10010939 [exp] 310 / 3e-106 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 309 / 9e-106 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 308 / 3e-105 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031392 [exp] 308 / 4e-105 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10000678 [exp] 298 / 2e-101 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 298 / 4e-101 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 296 / 2e-100 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084300 [exp] 454 / 1e-162 AT4G28850 403 / 1e-142 xyloglucan endotransglucosylase/hydrolase 26 (.1) Potri.006G160700 [exp] 449 / 5e-161 AT4G28850 390 / 9e-138 xyloglucan endotransglucosylase/hydrolase 26 (.1) Potri.002G060500 [exp] 321 / 3e-110 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 320 / 6e-110 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095200 [exp] 316 / 2e-108 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.002G060400 [exp] 314 / 1e-107 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.013G005700 [exp] 313 / 1e-106 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 311 / 1e-106 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G170100 [exp] 309 / 1e-105 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 309 / 1e-105 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10012978 pacid=23158582 polypeptide=Lus10012978 locus=Lus10012978.g ID=Lus10012978.BGIv1.0 annot-version=v1.0 ATGGCAACTTTTAGGTTCTCGCTTTTCATTGCATTGTCTGTATGTGCTGCTGTAGCATTCCACCAAACCTCCTCAGTTGATGCTAACTTCTACGAAACCG TAGACTTCTATTGGGGCGAGCAACATTCGGCCATTTTTGGGAGTGGTGATGACCTCCAGTTGTTATTGGATAACACATCAGGCTCTGGGATTCAGTCGAA GAGGGAATTCCTGTTTGGCAGCATTGAAATGTTAATCAAGTTGGTACCTGGAAACTCTGCAGGAACAGTCACTGCATATTATGTATCCTCCACCGGAGAC AGGCACGACGAGATTGACTTTGAGTTCCTGGGAAATGTCTCGGGACAGCCATTCATCATCCACACTAACATCTACACTCAAGGAAATGGAAGCAGGGAAC AGCAGTTCTACCCTTGGTTCGACCCAACTGCCGATTACCACAACTACACCATTCACTGGAATCCTTCTGCCATTGTGTGGTATGTGGACAGTGTGCCGAT CAGGGTTTACCGCAACTACGAGAGTGAAGGGATCCCTTTCCCAAACAAACAAGGGATGCGAGCTTACTCCAGCTTATGGAATGCTGATAACTGGGCAACT AGAGGAGGATTGGATAAGATCGACTGGACCTCCGCTCCCTTCATAGCTGGGTACCGCAACTTCGATGCACAGGCTTGCACGTGGAATGGTCTTTCCAGCA TCGACCAATGTGCTCTCGATACCCCAGTTAATTGGTGGACATCTCCTGAGCACAAACAGCTGAGCTATGCTAAGCAAGGGCAGATGAAATGGGCAAGAGA CAGTTACATGATCTATGACTACTGCACCGATTACCAGAGATTCAACGGCAACATGCCCCCTGAATGCTTCAAGCCACAATACTAA
AA sequence Show only first row Show all	>Lus10012978 pacid=23158582 polypeptide=Lus10012978 locus=Lus10012978.g ID=Lus10012978.BGIv1.0 annot-version=v1.0 MATFRFSLFIALSVCAAVAFHQTSSVDANFYETVDFYWGEQHSAIFGSGDDLQLLLDNTSGSGIQSKREFLFGSIEMLIKLVPGNSAGTVTAYYVSSTGD RHDEIDFEFLGNVSGQPFIIHTNIYTQGNGSREQQFYPWFDPTADYHNYTIHWNPSAIVWYVDSVPIRVYRNYESEGIPFPNKQGMRAYSSLWNADNWAT RGGLDKIDWTSAPFIAGYRNFDAQACTWNGLSSIDQCALDTPVNWWTSPEHKQLSYAKQGQMKWARDSYMIYDYCTDYQRFNGNMPPECFKPQY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	0	1
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	1.4	0.9369
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10022036 [exp]	2.8	0.8879
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	3.2	0.9247
					Lus10030114 [exp]	4.2	0.8820
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	4.2	0.9051
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	4.5	0.8875
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	7.7	0.8663
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	9.5	0.8722
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	9.9	0.8589
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10002296 [exp]	14.1	0.8704

Compare expression of checked genes

Lus10012978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.