Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19580 603 / 0 glyoxal oxidase-related protein (.1) AT1G67290 587 / 0 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT1G75620 402 / 2e-131 glyoxal oxidase-related protein (.1) AT1G19900 390 / 5e-127 glyoxal oxidase-related protein (.1) AT1G14430 388 / 9e-126 glyoxal oxidase-related protein (.1) AT3G57620 380 / 4e-123 glyoxal oxidase-related protein (.1) AT3G53950 350 / 2e-111 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011110 [exp] 934 / 0 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 744 / 0 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10043230 [exp] 721 / 0 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 699 / 0 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 688 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 683 / 0 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10012981 [exp] 530 / 0 AT1G67290 412 / 3e-139 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10015949 [exp] 416 / 1e-136 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 377 / 2e-121 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160800 [exp] 704 / 0 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 683 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 412 / 3e-135 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 406 / 6e-133 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 401 / 5e-131 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 392 / 2e-127 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 390 / 1e-126 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 389 / 1e-126 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 386 / 5e-125 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 360 / 1e-115 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10012979 pacid=23158538 polypeptide=Lus10012979 locus=Lus10012979.g ID=Lus10012979.BGIv1.0 annot-version=v1.0 ATGAGACTCTTCTTCTTCCCTCTATGTGTTGTCGTCCTCTTGTTCATCTCAGCATCCGCCCACGATCACCAAGAGCATGCCGGCGTGCCACACACCCACG ATCACCAAGAGCATGCCGGCGCGCCACACATCCACGATCACCAAGAGCATGCCGGCGCGCCACACATCCACGATCACCAAGAGCATGCCGGCGCGCCACA CATCCACGATCACCAAGAGCATGCCGGCGCGCCACACATCCACGATCACCAAGAGCATGCCGGCGCGCCACACATCCACGATCACCAAGAGCATGCCGGC GCGCCACACATCCACGATCACCAAGAGCATGCCGGCGCGCCACACATCCACGATCACCAAGAGCATGCCGGCGCGCCACACATCCACGATCACCAAGAGC ATGCCGGCGCGCCACACATCCACGATCACCAAGAGCATGCCGGCGCGCCACACATCCACGATCACCAAGAGCATGCCGGCGCGCCACACATCCACGATCA CCAAGAGCATGCCGGCGCGCCACACATCCACGATCACCAAGAGCATGCCGGCGCGCCACACACGGAGCCAGAGGCTCCTAGCCCGGGCTTTGTGGACCCG ACCTTCTTGAACGAGCATAAGCCGTTGGGTCCCCACGAGAAGTTCGGGGACCCGTTTGGAAACCCGCATGACTACAAGGAGAAGAAGCTCCCTGACGACT TCGGGACCAAGCAGTTCCAAGGCACCGACATCAAGGACTTCGTCGGCGGGCCCGTCGCAGCCCCCGTGGTCGAGGTGGATTCATTCAAGGGGAAGTGGGA ACTTTTCACTGACAACTCAGGGGTGTCGGCTATGCACACCATCTTGCTCCCCAACTGCGAGCACGTGCTCATGTACGACGCCACCATCTGGCGTATCTCG AAGATCATGTTGCCTGAAGGTCAGTGCAGAATTTTGGATCAGGCCACTGGCGAGAAGGATTGCTTTGCTCATTCCGTGTTGCTCAACATCAAGACTGCTG AACTCATTCCACTCGTGCTTAACACGGATACATGGTGCTCGTCGGGAGGGCTAACCCTAGAAGGGAACCTAATAAGCACTGGAGGGTTCCAAGGAGGAGC AAACACAGTCCGTTACCTAAACAACTGCCCCAAATGCGCATGGAAGGAAGATCCATCCGCATTATCCGCACCTCGTTGGTACTCAACCCAACAACAGCTA GCCGACGGTCGTATGATCGTGATCGGTGGTCGTGGCGCACAGAGTTACGAGTACATCCCACAGGAAGGAACCTCAAATGCGAAGCCTTTCTTCTTTGACT TCCTCAAGCAGACGACCGACCCAGACGAGAACAATCTCTACCCGTTCGTGTTCCTCTCCCCGGATAAAAACGTCTTCGTTTTCGCCAACAATCGGTCCGT CCTCCTCAACCCTTACACAAACGCGGTAGTTAAGGAGTTCCCCGCACTTCCCGGAGGACACCGTAACTACCCCGCTAGTGGAATGGGGGTGTTGCTTCCC TTGGAAGTCCATTCTACATCCCCCGATGACATTATTGATGCAGAAGTCCTCATTTGCGGTGGTTCCGCCCATATTGACTCATACACATTGGCTTCAAAGG GAATGTACTATGAAGCCCTTAAGGATTGCGGCAGGTTGAAGATTACCAGGACACATCCCAATTGGCGTCGGGAGCTCATGCCTACTTCCAGGATTATGGG CGATATGGTGATTCTCCCCACGGGAGAAGTACTAATACTAAACGGAGCACAGAGAGGAGCATCCGGGTGGGGATTCGCCCGCGACCCGAACCAAATCCCC GTACTTTTCAACTACAAAGCACCCAACAAGCAGCAACTGTTTCAGGAGCTAGCCCCATCCAACATCCCAAGAATGTACCATTCGACCTCAGTGGTCCTCC CAGACGGGAAAGTGCTGGTCGCCGGTAGCAACACCAACAACGGCTATATCTACGCAGATGCCACCTTCCCGACAGAGCTACGCGTTGAGAAATTCTCCCC TCCTTACTTGGATCCAGCTAGGGCCCAGAAGAAGCCCAAGCTCGAGGAAGGCGGGTACCCGAAAACGATGACGTACGGACAGGAGATGACCCTGAAGATC ACCCTCAACGAGAAATCCTTCCTGAAGAAGAACTTTAAAGTTACCATCTACGTCCCGGCTTTCACCACCCATGGGGTTGCAATGAACCAGAGGTTGGTGA TTCTGCTGATCAAAGATGTGGTTCAAGTTGGGGAAGGGAAGTACGACGTCCAGGCTATGGCCCCGCCGACCGCCGCCGTGGCTCCCACCGGTTACTACTT GCTCAGTGTTGTTCATAACGGCCTCCCAACTGAAGCCGTTTGGGTGCAGCTCCGTGAAAAGTAA
AA sequence Show only first row Show all	>Lus10012979 pacid=23158538 polypeptide=Lus10012979 locus=Lus10012979.g ID=Lus10012979.BGIv1.0 annot-version=v1.0 MRLFFFPLCVVVLLFISASAHDHQEHAGVPHTHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAG APHIHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAGAPHIHDHQEHAGAPHTEPEAPSPGFVDP TFLNEHKPLGPHEKFGDPFGNPHDYKEKKLPDDFGTKQFQGTDIKDFVGGPVAAPVVEVDSFKGKWELFTDNSGVSAMHTILLPNCEHVLMYDATIWRIS KIMLPEGQCRILDQATGEKDCFAHSVLLNIKTAELIPLVLNTDTWCSSGGLTLEGNLISTGGFQGGANTVRYLNNCPKCAWKEDPSALSAPRWYSTQQQL ADGRMIVIGGRGAQSYEYIPQEGTSNAKPFFFDFLKQTTDPDENNLYPFVFLSPDKNVFVFANNRSVLLNPYTNAVVKEFPALPGGHRNYPASGMGVLLP LEVHSTSPDDIIDAEVLICGGSAHIDSYTLASKGMYYEALKDCGRLKITRTHPNWRRELMPTSRIMGDMVILPTGEVLILNGAQRGASGWGFARDPNQIP VLFNYKAPNKQQLFQELAPSNIPRMYHSTSVVLPDGKVLVAGSNTNNGYIYADATFPTELRVEKFSPPYLDPARAQKKPKLEEGGYPKTMTYGQEMTLKI TLNEKSFLKKNFKVTIYVPAFTTHGVAMNQRLVILLIKDVVQVGEGKYDVQAMAPPTAAVAPTGYYLLSVVHNGLPTEAVWVQLREK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19580			glyoxal oxidase-related protei...		Lus10012979 [exp]	0	1
AT5G59100			Subtilisin-like serine endopep...		Lus10016484 [exp]	2.2	0.8695
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10009617 [exp]	15.6	0.8177
					Lus10034328 [exp]	20.2	0.7997
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025104 [exp]	24.4	0.7901
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	26.9	0.7816
					Lus10011425 [exp]	29.5	0.7816
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10000835 [exp]	30.0	0.7160
					Lus10011832 [exp]	31.9	0.7816
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	34.1	0.7816
AT3G58150			Optic atrophy 3 protein (OPA3)...		Lus10039862 [exp]	36.1	0.7816

Compare expression of checked genes

Lus10012979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.