Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67290 231 / 1e-72 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 229 / 5e-72 glyoxal oxidase-related protein (.1) AT3G53950 167 / 5e-49 glyoxal oxidase-related protein (.1) AT1G75620 167 / 8e-49 glyoxal oxidase-related protein (.1) AT1G19900 167 / 1e-48 glyoxal oxidase-related protein (.1) AT1G14430 150 / 2e-42 glyoxal oxidase-related protein (.1) AT3G57620 148 / 8e-42 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034959 [exp] 423 / 1e-146 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10011109 [exp] 344 / 5e-117 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 340 / 3e-114 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 258 / 7e-83 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 256 / 2e-81 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 253 / 1e-79 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 240 / 6e-76 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10012387 [exp] 193 / 3e-61 AT1G19900 352 / 2e-119 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 184 / 3e-55 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160800 [exp] 264 / 2e-85 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 262 / 2e-84 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 189 / 4e-57 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 184 / 3e-55 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 181 / 3e-54 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 171 / 2e-50 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 164 / 6e-48 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 158 / 2e-45 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 157 / 5e-45 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 137 / 1e-37 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929)
Representative CDS sequence Show only first row Show all	>Lus10012980 pacid=23158542 polypeptide=Lus10012980 locus=Lus10012981.g ID=Lus10012980.BGIv1.0 annot-version=v1.0 ATGCTACTCCCTTCGGGAGAAGTCCTCATCATTAACGGAGCCAAGAGAGGGGCTTCCGGTTGGGGTTTCGCAAGGGAACCTAATTTGACGCCGTTAATTT ACACCCCCAAGGCCAAATTGGGGATGAGGTTCCGTGAATTGGCCCCCTCCGAAATCCCTAGAATGTACCATTCCTCTTCCGTCGTCCTTCCCGACGGCAG GGTTTTGATTGCCGGAAGCAACACGAATAACGGCTACATCTACGAGAAGGCCATGTTCCCGACGGAATTGAGGGTTGAGAAATTCTCCCCGCCTTACCTG GATCCGGCGCTGGCGGACAAGAGGCCGGAGATCTTGAACGGAGCTGCAATTGCGCAGATTGGGTACAAAGCAAAGATTTCGATTCAGGTGAAGGTCCCCG CGGGACCGGATATGCAGAACATTATGAAGGTTACGATGGGTGTACCTGGATTTAGCACTCACGGCGTGACGATGAATCAGAGACTGATAATGCTGGGATT GGATACGGTGAATCCCACACCTGGAAAGCCTGGGGTTTTCGACGTCGTCGCCGGAGCTCCGCCATACAGTGCGGTGGCGCCCACCGGGTATTATATGCTC AGCGTCGTTTATCAAGGGATCCCCAGTAAAACCGTCTGGGTACAGTTGAAGTAA
AA sequence Show only first row Show all	>Lus10012980 pacid=23158542 polypeptide=Lus10012980 locus=Lus10012981.g ID=Lus10012980.BGIv1.0 annot-version=v1.0 MLLPSGEVLIINGAKRGASGWGFAREPNLTPLIYTPKAKLGMRFRELAPSEIPRMYHSSSVVLPDGRVLIAGSNTNNGYIYEKAMFPTELRVEKFSPPYL DPALADKRPEILNGAAIAQIGYKAKISIQVKVPAGPDMQNIMKVTMGVPGFSTHGVTMNQRLIMLGLDTVNPTPGKPGVFDVVAGAPPYSAVAPTGYYML SVVYQGIPSKTVWVQLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012980 [exp]	0	1
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	1.0	0.9942
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	2.4	0.9177
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017625 [exp]	3.2	0.8886
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10010942 [exp]	3.5	0.9137
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10041370 [exp]	3.5	0.8637
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	4.0	0.9021
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10034959 [exp]	5.8	0.8573
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	7.0	0.8758
AT3G09950			unknown protein		Lus10038794 [exp]	7.7	0.8419
					Lus10039498 [exp]	9.7	0.8536

Compare expression of checked genes

Lus10012980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.