Plant FIBer expression Database

Lus10012982 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28840 68 / 3e-14 TIE1 unknown protein
AT2G20080 62 / 5e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034960
[exp]
106 / 8e-29 AT2G20080 74 / 5e-17 unknown protein
Lus10042849
[exp]
42 / 0.0002 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G084100
[exp]
90 / 2e-22 AT4G28840 108 / 1e-29 unknown protein
Potri.006G161100
[exp]
86 / 4e-21 AT2G20080 102 / 2e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10012982 pacid=23158551 polypeptide=Lus10012982 locus=Lus10012982.g ID=Lus10012982.BGIv1.0 annot-version=v1.0
ATGGGTGGTAATGAAAGGGGAAGCAGTGGATCATCATCGTCGTCAAGGAAAGGGAAGAAGGGTAATAATAGTGGTAATTCCTCAGAGAAACAGCCTAAGC
AGCCACAAAGAGGACTTGGAGTTGCTCAATTGGAGAAGATCAGATTAACTGGTCAACTTGGTTATAATCACCACCACCCTTCTTCCTATCACATCAACCC
TAATTACCCGTCTAATCTCACCCACCAGGAGGATATTAGAGGCCAAAGCGGTTATTCATCAATACCATCTTCTTCCTTCTCTTATTCATCCTCACCTATG
CCTTCCTACGCCTACAATCCAAACATCATGATGGGAGGAGGTACAGATTATGACAGAAGCAGTATGAGATATGGTGACCATCACACCCAACCCACGGCGG
CGGCTCCAAGTTGGAATCATCCTGGGCACAGTTTGTATGAATCTCGTCAGCCAAACGCAGCTAAACACCTTTTCAATCTGCATGAGCAGACAACAACATC
AAGGAGCAAGAAACACAGGAGTAGCGGCTCGAATGGGTCGAGCAGTCAGAACTCGGAATCCAGCGACTCCCAAGAACTAGACTTGGAGCTAAGGTTGTCA
CTGTAA
AA sequence
>Lus10012982 pacid=23158551 polypeptide=Lus10012982 locus=Lus10012982.g ID=Lus10012982.BGIv1.0 annot-version=v1.0
MGGNERGSSGSSSSSRKGKKGNNSGNSSEKQPKQPQRGLGVAQLEKIRLTGQLGYNHHHPSSYHINPNYPSNLTHQEDIRGQSGYSSIPSSSFSYSSSPM
PSYAYNPNIMMGGGTDYDRSSMRYGDHHTQPTAAAPSWNHPGHSLYESRQPNAAKHLFNLHEQTTTSRSKKHRSSGSNGSSSQNSESSDSQELDLELRLS
L

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20080 unknown protein Lus10012982
[exp]
0 1
AT2G25810 TIP4;1 tonoplast intrinsic protein 4;... Lus10037895
[exp]
1.0 0.9631
AT5G06300 LOG7 LONELY GUY 7, Putative lysine ... Lus10012436
[exp]
1.4 0.9562
AT5G13750 ZIFL1 zinc induced facilitator-like ... Lus10033392
[exp]
1.7 0.9415
AT3G01900 CYP94B2 "cytochrome P450, family 94, s... Lus10012531
[exp]
2.2 0.9398
AT3G26040 HXXXD-type acyl-transferase fa... Lus10004441
[exp]
6.5 0.9156
AT2G37130 Peroxidase superfamily protein... Lus10015074
[exp]
7.3 0.9394
AT5G23750 Remorin family protein (.1.2) Lus10008477
[exp]
8.6 0.8997
AT3G26590 MATE efflux family protein (.1... Lus10036851
[exp]
9.9 0.9352
AT3G57040 ATRR4, ARR9 RESPONSE REGULATOR 4, response... Lus10002750
[exp]
11.7 0.9122
AT1G70830 MLP28 MLP-like protein 28 (.1.2.3.4.... Lus10020498
[exp]
13.3 0.9401

Lus10012982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.