Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29080 257 / 1e-84 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT2G22670 218 / 3e-69 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT5G65670 218 / 9e-69 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT3G04730 194 / 5e-61 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT3G23050 190 / 4e-59 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT4G14550 189 / 4e-59 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT1G04250 182 / 2e-56 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 138 / 6e-40 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 135 / 1e-38 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT1G04550 130 / 6e-36 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034962 [exp] 481 / 1e-172 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10042929 [exp] 228 / 2e-72 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10028222 [exp] 224 / 9e-72 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10019241 [exp] 223 / 4e-71 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10011583 [exp] 212 / 6e-67 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10039414 [exp] 199 / 2e-62 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10015907 [exp] 184 / 2e-56 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10006585 [exp] 164 / 2e-48 AT3G04730 254 / 3e-85 indoleacetic acid-induced protein 16 (.1) Lus10014731 [exp] 152 / 4e-44 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G161400 [exp] 263 / 1e-86 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.003G051300 [exp] 254 / 9e-83 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 249 / 7e-81 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.002G108000 [exp] 245 / 3e-79 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.013G041400 [exp] 205 / 3e-65 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 204 / 1e-64 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G053900 [exp] 202 / 5e-64 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.010G078300 [exp] 199 / 2e-62 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G044900 [exp] 193 / 1e-60 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 189 / 7e-59 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10012984 pacid=23158547 polypeptide=Lus10012984 locus=Lus10012984.g ID=Lus10012984.BGIv1.0 annot-version=v1.0 ATGGACGACAAAGCTCCCGACTCGCCACCAAATCCTACCATCTCCAACACACCTGTTTCCGGCCTCTCCTTGAACTTGAAAGCTACCGAGTTGAGGCTCG GCTTACCCGGCTCCCAGTCCCCCGACAGGGACAACAACCTCCTCAACCCACCTCAGCTCTGCATCGGCTTCCCCAATAAAACAGGGGCCAAGAGAGGCTT CTCCGTCGCCATTCACGGCGGCGGCTCCTCCTCCTCCTCCGCCAACTGGGTGTTCTCCGGATCTGATACCAATTTCTCCTCTCCTAGTAATAAAGTTATA CCGGAGCAAGGTAATAAGACTGCTAAAGACGGGCAGCCTCCTCCTCAGCCGTCGCCGGCCGATGCCCACACGCCGGCGAAGAAGAACACTGACGCCGCGG CTCCAGCTTCCAAGGCTCAAGTGGTGGGATGGCCGCCAATTCGTTCGTATCGAAAGAACACGATGGCTTCGTCGACTCAGACTACAACAAAGAAGAAGAA CAACAACAACAATAGTAGTAGTGAGGAGGGAGGAGTGGCTGGAGATGTTCTAGTTCCAGTACAGTTGGGGGAATCAAAATCATCATCATCATCTTCAGGG TGTTTGTATGTCAAAGTAAGCATGGACGGTGCTCCTTATCTCAGGAAAGTTGATCTCAACTCTTATGGCGGCTACCAAAATCTCTCCCTCGCACTCGAGA ACATGTTCAGCTGCTTCACTATCGGTCAATATGGTTGTCATGGAAGAGATGGTGTAAGTGAGAGCCGACTGGTAGATATTCTACATGGTTCTGAATACGT ACTTACTTACGAAGATAAAGATGGTGACTGGATGCTTGTTGGTGATGTTCCTTGGAATATGTTCATTGACTCTTGCAGGAGGCTGAGGATCATGAAGAGT TCAGACGCCATTGGCCTGGCGCCAAGAGCATTCGAGAAATGCAAAAGCAGCAACTAG
AA sequence Show only first row Show all	>Lus10012984 pacid=23158547 polypeptide=Lus10012984 locus=Lus10012984.g ID=Lus10012984.BGIv1.0 annot-version=v1.0 MDDKAPDSPPNPTISNTPVSGLSLNLKATELRLGLPGSQSPDRDNNLLNPPQLCIGFPNKTGAKRGFSVAIHGGGSSSSSANWVFSGSDTNFSSPSNKVI PEQGNKTAKDGQPPPQPSPADAHTPAKKNTDAAAPASKAQVVGWPPIRSYRKNTMASSTQTTTKKKNNNNNSSSEEGGVAGDVLVPVQLGESKSSSSSSG CLYVKVSMDGAPYLRKVDLNSYGGYQNLSLALENMFSCFTIGQYGCHGRDGVSESRLVDILHGSEYVLTYEDKDGDWMLVGDVPWNMFIDSCRRLRIMKS SDAIGLAPRAFEKCKSSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	0	1
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	1.0	0.9709
AT3G21690			MATE efflux family protein (.1...		Lus10039675 [exp]	2.0	0.9073
AT5G67350			unknown protein		Lus10010401 [exp]	2.0	0.9105
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	3.2	0.9021
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	3.5	0.9006
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	3.5	0.9077
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	3.5	0.8919
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	4.6	0.8997
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	6.2	0.8913
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	7.3	0.8938

Compare expression of checked genes

Lus10012984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.