Plant FIBer expression Database

Lus10012985 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G42860 41 / 5e-05 zinc knuckle (CCHC-type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011688
[exp]
47 / 2e-07 ND /
Lus10009212
[exp]
46 / 2e-07 ND 37 / 0.001
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G112676
[exp]
40 / 0.0001 AT5G13920 116 / 7e-28 GRF zinc finger / Zinc knuckle protein (.1)
Potri.T125604
[exp]
40 / 0.0002 AT5G13920 115 / 1e-27 GRF zinc finger / Zinc knuckle protein (.1)
Potri.T125504
[exp]
39 / 0.0002 AT5G13920 106 / 1e-25 GRF zinc finger / Zinc knuckle protein (.1)
Potri.009G094001
[exp]
38 / 0.0005 AT3G42860 44 / 3e-05 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF06839 zf-GRF GRF zinc finger
Representative CDS sequence
>Lus10012985 pacid=23158528 polypeptide=Lus10012985 locus=Lus10012985.g ID=Lus10012985.BGIv1.0 annot-version=v1.0
ATGACCAGTGTTGGATCTTCAGGCGGAACCTCCGAAGGCAGGAGTTCCTTCTATTCAGGCATAATCGGGCGTGCGCTATCAATACGTCAGGGACTCGAAA
AAAACCCAGGGAGGAAGTTCTACTGCTGCCCAGATTGGAGGGATCCGAAATCAAGTTGTGGGTTTTTCGGATGGGTTGATGTATGTCCGAAATTTGGCGA
CGAAGACGGTATCGATGTTATTGCAGCAGAGAACTGTCAACTGAAACCTAGATTGAAGGAGTTGTCCAATTCGATTATGATCGCTAGGTCGAAGGCCGAT
CGGAGGAAGAAAGGGACACCAATATTAATTACAGATTAA
AA sequence
>Lus10012985 pacid=23158528 polypeptide=Lus10012985 locus=Lus10012985.g ID=Lus10012985.BGIv1.0 annot-version=v1.0
MTSVGSSGGTSEGRSSFYSGIIGRALSIRQGLEKNPGRKFYCCPDWRDPKSSCGFFGWVDVCPKFGDEDGIDVIAAENCQLKPRLKELSNSIMIARSKAD
RRKKGTPILITD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G42860 zinc knuckle (CCHC-type) famil... Lus10012985
[exp]
0 1
AT3G18290 BTS, EMB2454 embryo defective 2454, BRUTUS,... Lus10034346
[exp]
1.0 0.9394
AT2G42920 Pentatricopeptide repeat (PPR-... Lus10007341
[exp]
1.7 0.9228
AT2G27810 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBA... Lus10009402
[exp]
2.0 0.9341
AT1G16560 Per1-like family protein (.1.2... Lus10038885
[exp]
2.2 0.9118
AT2G33700 Protein phosphatase 2C family ... Lus10012244
[exp]
2.6 0.9056
AT4G01030 pentatricopeptide (PPR) repeat... Lus10009813
[exp]
4.0 0.9052
ATCG00480 ATCG00480.1, AT... ATP synthase subunit beta (.1) Lus10032826
[exp]
5.7 0.9130
AT5G61960 AML1 MEI2-like protein 1 (.1.2) Lus10032537
[exp]
7.3 0.9043
ATCG00500 ATCG00500.1, AC... acetyl-CoA carboxylase carboxy... Lus10002473
[exp]
8.5 0.9068
AT4G01030 pentatricopeptide (PPR) repeat... Lus10040917
[exp]
9.2 0.8860

Lus10012985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.