Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60060 384 / 2e-132 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT5G53900 137 / 7e-37 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 133 / 1e-35 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT2G31280 76 / 1e-14 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT1G06150 76 / 1e-14 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G27230 64 / 6e-11 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 50 / 1e-06 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT5G24352 45 / 4e-06 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029179 [exp] 501 / 8e-179 AT1G60060 429 / 6e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10024800 [exp] 210 / 2e-65 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10018736 [exp] 208 / 2e-64 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10041936 [exp] 124 / 6e-32 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10005549 [exp] 112 / 1e-27 AT5G53900 410 / 7e-142 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10033880 [exp] 66 / 3e-11 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10001527 [exp] 51 / 1e-06 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10033222 [exp] 51 / 1e-06 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10000609 [exp] 45 / 6e-05 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096400 [exp] 398 / 4e-138 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.014G024000 [exp] 256 / 3e-82 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.001G397800 [exp] 132 / 8e-35 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.011G116400 [exp] 130 / 5e-34 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.006G090000 [exp] 72 / 1e-13 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G222500 [exp] 69 / 3e-12 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 66 / 2e-11 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.003G144900 [exp] 58 / 6e-09 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 56 / 2e-08 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 56 / 3e-08 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012986 pacid=23149870 polypeptide=Lus10012986 locus=Lus10012986.g ID=Lus10012986.BGIv1.0 annot-version=v1.0 ATGGAAGAACATCTAAGCCCATTAGCAATCACACATCTGCTTCAGCACACTCTAAGGAGCTTGTGCATCCATGAAAACTCCCAGTGGGTTTATGCTGTTT TCTGGCGGATCTTGCCCAGAAACTACCCTCCCCCCAAATGGGATGGCCAAGGTGCTTATGACAGGTCCAGAGGCAACAGGAGGAACTGGATTCTGGTTTG GGAAGATGGGTTCTGCAACTTCGCAACCGCGGCTGGAGCAGATCATACCGTGAACGCCACCAACTCATCGTCTGATGGAGGTGATCAGTTTCAGGGGCAT TATGGTCATCATCAGCATCAACAAGGGCTTCAGCCTGAGCTGTTCTTCAAGATGTCCCATGAAATCTACAACTATGGAGAAGGATTGATAGGGAAAGTCG CGGCGGATCATAGCCATAAGTGGATATACAAAGAACCCAATGAGCAAGAGATCAACTTCTTGTCTGTTTGGCATAACTCTGCTGATTCTCAACCAAGGAC ATGGGAAGCTCAGTTCCAGTCCGGCATCAAGACCATAGCCCTGATCGCGGTTCGAGAAGGCGTGGTGCAACTCGGAGCGATCAACAAGGTGGTAGAAGAC TTGAGCTATGTGGTGCTACTAAGGAAGAAGTTCAGCTACATAGAGAGCATCCCAGGAGTGCTCTTGCCACACCCTTCATCCTCATCTTGCCCACCTTCGA TCCTCCCATTTCGAATCGACCCATTTGGAAATCCGTTCCTCCCTCCGCCACCTCACCACCAATCTTGGAACCACTTCCAGGGTGGCTGGGGCGGCGGCGG TGGCCCGGAATACTACGACCAAGTTCCACCGCCGCCGTACAAACAGATGATAACTCCTTCGATGAGTAGCCTCGAAGCCTTGCTCTCCAAGCTCCCTTCT GTTGTCCCACCTGGCCACCACCACCATCATCATCATCCCAAGGAGGAGACGACTACAACTACGGCTGAGGAAGACGGTGGCCGACATGATGACGTGGTGG CGGCGGGAGAGAGTAGTAGCTCGATGTCGGGATATGGGAGAAGTGGTAATAATGGTCAACTTGAGTTTCATCGTCACCACCATGATTTGAACGTGAATTG TAGCGCCGCCAATAATGGGTATTTCGAGTGA
AA sequence Show only first row Show all	>Lus10012986 pacid=23149870 polypeptide=Lus10012986 locus=Lus10012986.g ID=Lus10012986.BGIv1.0 annot-version=v1.0 MEEHLSPLAITHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFATAAGADHTVNATNSSSDGGDQFQGH YGHHQHQQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNEQEINFLSVWHNSADSQPRTWEAQFQSGIKTIALIAVREGVVQLGAINKVVED LSYVVLLRKKFSYIESIPGVLLPHPSSSSCPPSILPFRIDPFGNPFLPPPPHHQSWNHFQGGWGGGGGPEYYDQVPPPPYKQMITPSMSSLEALLSKLPS VVPPGHHHHHHHPKEETTTTTAEEDGGRHDDVVAAGESSSSMSGYGRSGNNGQLEFHRHHHDLNVNCSAANNGYFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	0	1
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	1.4	0.9501
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	2.0	0.9297
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	2.2	0.9270
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	2.4	0.9471
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	3.0	0.9302
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	3.5	0.8831
					Lus10020368 [exp]	4.0	0.9004
					Lus10015658 [exp]	4.2	0.9175
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	5.9	0.9145
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030007 [exp]	6.0	0.8994

Compare expression of checked genes

Lus10012986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.