Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40250 243 / 2e-77 RING/U-box superfamily protein (.1) AT1G23980 238 / 1e-75 RING/U-box superfamily protein (.1) AT3G48030 159 / 9e-46 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT2G18650 154 / 8e-43 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT4G30400 144 / 5e-39 RING/U-box superfamily protein (.1) AT5G57750 109 / 3e-28 RING/U-box superfamily protein (.1) AT3G60220 102 / 3e-24 ATL4 TOXICOS EN LEVADURA 4 (.1) AT4G40070 93 / 3e-21 RING/U-box superfamily protein (.1) AT2G20030 94 / 4e-21 RING/U-box superfamily protein (.1) AT5G05810 92 / 7e-21 ATL43 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029178 [exp] 584 / 0 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10014526 [exp] 239 / 6e-76 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 231 / 4e-73 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10019973 [exp] 152 / 1e-42 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10015502 [exp] 151 / 3e-42 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10036466 [exp] 97 / 4e-22 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10023617 [exp] 96 / 4e-22 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10031515 [exp] 96 / 6e-22 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10041134 [exp] 96 / 7e-22 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072300 [exp] 266 / 9e-87 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 261 / 1e-84 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 247 / 3e-79 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 224 / 2e-70 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 155 / 9e-43 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 152 / 6e-42 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 96 / 8e-22 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 95 / 2e-21 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 94 / 4e-21 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 94 / 5e-21 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10012987 pacid=23149810 polypeptide=Lus10012987 locus=Lus10012987.g ID=Lus10012987.BGIv1.0 annot-version=v1.0 ATGGTGATGCATTGGGTTTCATCGCCATCTCCTTCTGATTCGTTGCCATACAATGGCGATTATCAGAAACAGTCTTCAGGTGGAAAAATCAGTCCAGCTA TACTGTTCATCATTATAATCCTAGCAGTACTGTTCTTCATATCAGGTCTTCTCCACTTACTCGTCAGATTCCTCATCAAGCAGAGGGATTCCGGTTCAAT GTCCGACTCGAACCGAAACGGACCGGACATCTCAGCCAACGACACATTCCAAAGGCAGTTACAGCAGCTATTCCATCTCCATGATTCAGGTTTGGATCAA GCCTTCATTGATGCTCTACCTGTGTTTCCTTACAAGGACATTATGGGAATTAAGGAGCCCTTTGATTGTGCTGTTTGTCTATGTGAATTCTCTGATAAGG ACAAGCTTAGATTGCTCCCTATCTGTAGCCATGCTTTCCATATAGATTGTATAGACGCATGGTTGCTGTCCAATTCCACTTGCCCTATCTGTAGAGGCGG CCTTCACTCGGTCCAATACGAGAATCCAATTTTTTTCGATCTGGAAGATCAAAGGGGGAGGGAAGATGATCAGGTTCAAGGAGTGGAGAGTGCTAGCATT ATGAATTCTAGGAGGGTTTTCTCTGTTAGACTTGGCAAGTTTAGGAGTCCTGTTAATGAAGTAGCTCCTGTGGTTGAGAGAAGACAACAGCCGGTTGGGG AAACAAGTAGCGGTGTGTTGGATGCTCGGAGGTGTTTTTCGATGGGAACGTATCAGTATGTTGTGGCTGATTTGGAGTTGCAGGTGGCATTGAGCCCTAA CAATATCAATAACAGCAGCAGCAGTAGCAACAGAAGAGATTTTGCGGTGAAGAATGCTGTCAAAGGGCGAAATGGACAAATTGAGAATGATCCTTCTTCT GTTCTTGATGGGAAAAGGATTAACATTCGGAGTAAAGGTGAAAGCTTTTCTGTCTCCAAGATATGGCAATGGTCCAGAAAAGGCAATTTGCCAGGTTCTT CTTCTTCTGTTCCTGTTACTGTTGATTTCCCTTGGAATGAACTTAGTAGAACCAAACAGCAATGTACGTAG
AA sequence Show only first row Show all	>Lus10012987 pacid=23149810 polypeptide=Lus10012987 locus=Lus10012987.g ID=Lus10012987.BGIv1.0 annot-version=v1.0 MVMHWVSSPSPSDSLPYNGDYQKQSSGGKISPAILFIIIILAVLFFISGLLHLLVRFLIKQRDSGSMSDSNRNGPDISANDTFQRQLQQLFHLHDSGLDQ AFIDALPVFPYKDIMGIKEPFDCAVCLCEFSDKDKLRLLPICSHAFHIDCIDAWLLSNSTCPICRGGLHSVQYENPIFFDLEDQRGREDDQVQGVESASI MNSRRVFSVRLGKFRSPVNEVAPVVERRQQPVGETSSGVLDARRCFSMGTYQYVVADLELQVALSPNNINNSSSSSNRRDFAVKNAVKGRNGQIENDPSS VLDGKRINIRSKGESFSVSKIWQWSRKGNLPGSSSSVPVTVDFPWNELSRTKQQCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40250			RING/U-box superfamily protein...		Lus10012987 [exp]	0	1
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	5.0	0.8822
AT1G69430			unknown protein		Lus10036796 [exp]	8.7	0.8670
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	9.8	0.8802
AT5G52180			unknown protein		Lus10015101 [exp]	10.4	0.8581
AT1G21370			unknown protein		Lus10029764 [exp]	11.0	0.8687
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	12.8	0.8673
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10030884 [exp]	14.3	0.8643
AT3G25130			unknown protein		Lus10011835 [exp]	20.6	0.8171
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	21.0	0.8568
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	21.2	0.8617

Compare expression of checked genes

Lus10012987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.