Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60070 1321 / 0 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 1259 / 0 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G23940 412 / 3e-135 ARM repeat superfamily protein (.1) AT5G22780 276 / 6e-79 Adaptor protein complex AP-2, alpha subunit (.1) AT5G22770 275 / 8e-79 ALPHA-ADR alpha-adaptin (.1.2.3) AT1G31730 228 / 2e-62 Adaptin family protein (.1) AT1G48760 115 / 3e-26 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029177 [exp] 1584 / 0 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030640 [exp] 1402 / 0 AT1G60070 1322 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030848 [exp] 1357 / 0 AT1G60070 1288 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10005371 [exp] 277 / 2e-79 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10020522 [exp] 276 / 9e-79 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 270 / 1e-76 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 269 / 2e-76 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10037271 [exp] 222 / 2e-60 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10035684 [exp] 220 / 8e-60 AT1G31730 1312 / 0.0 Adaptin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092800 [exp] 1386 / 0 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.016G104700 [exp] 1373 / 0 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G189700 [exp] 279 / 6e-80 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 275 / 9e-79 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.004G235200 [exp] 231 / 1e-63 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.012G055000 [exp] 115 / 5e-26 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.015G045600 [exp] 102 / 6e-22 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.001G101400 [exp] 43 / 0.001 AT4G23460 1486 / 0.0 Adaptin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF02883 [flax] [poplar] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012988 pacid=23149848 polypeptide=Lus10012988 locus=Lus10012988.g ID=Lus10012988.BGIv1.0 annot-version=v1.0 ATGGCTATGGCTGGCATGGACATGATCAGGGCAATACGTGCTTGCAAAACTGCTGCAGAGGAGCGGGCAGTTGTCAGAAAAGAGTGTGCTGCTATTCGTG CTTCAATTAATGAAAACGATAATGACTACAGACATCGTAACCTGGCTAAGCTCATGTTTATTCATATGCTTGGATATCCAACGCATTTTGGGCAAATGGA GTGCTTGAAGTTAATTGCATCACCGGGATTTCCTGAGAAGAGAATAGGATATCTTGGTTTGATGCTGCTTCTCGATGAAAGACAGGAAGTACTAATGTTG GTCACGAACTCCGTAAAACAAGATCTTAATCACACAAACCAGTATATCGTGGGGCTTGCTCTTTGTGCTTTGGGGAATATTTGTTCGTCGGAAATGGCAC GTGATCTGGCTCCAGAAGTAGAAAGATTGCTGCAATTTCGAGATCCAAACATTCGGAAAAAAGCAGCATTGTGCTCTGTAAGGATTATAAAGAAAGTCCC AGATCTGGCGGAAAATTTCATTAATCCTGTTGCAGCTTTACTTAAAGAAAAGCATCATGGAGTCTTAATAACAGGAGTTCAACTATGTACAGATCTTTGT AAAGTCAGTCCTGAGGCGCTGGAATATTTTAGAAAGAAATGCACTGATGGATTGGTCAGGACTTTACGAGATCTTGTGAACAGCCCATATGCACCAGAGT ATGACATTGCTGGGATCACAGACCCGTTTCTTCATATTAGATTGCTAAGGCTCTTGCGTGTTCTAGGCCATGGAGATGCTGATGCTAGTGATGTTATGAA TGACATACTTGCTCAGGTGGCAACGAAGACCGAGTCAAATAAGAATGCCGGAAATGCTATTTTGTATGAATGCGTTGAAACCATCATGAGCATTGAAGAC AATGGTGGCTTGCGAGTCCTTGCTATTAATATCCTTGGAAGATTTTTGTCAAACCGTGACAACAATATCAGATATGTTGCTTTAAACATTCTGATGAGGG CTATATCTGTAGATGCTCAAGCAGTGCAAAGGCATCGTGCAACAATTTTGGAGTGTGTAAAGGATTTAGATGCATCAATTAGGAAAAGAGCATTGGAACT GGTGTACCTCCTGGTCAATGAAAGCAATGTAAAACCTTTGACTAAAGAATTAGTTGATTATTTGGAAGTTAGTGATCAAGATTTTAAAGGAGATCTGACT GCCAGAATTTGCTCCATCATTGAAAAGTATTCGCCCGAGAAAATTTGGTATATCGATCAGATGCTCAAGGTTCTAACAGAGGCTGGGAACTTTGTGAAAG ATGAAGTATGGCATGCCCTAGTTGTTGTCATCAGCAATGCTTCAGACCTCCATGGATATACAGTGAGAGCTTTGTACAGATCATTCCAGACGTCAGCAGA ACAGGAAACCCTTGTCCGAGTGGCAGTCTGGTGCATAGGAGAATATGGTGACTTGTTGGTGAATAACGCTGGAATACTTGATGTAGAAGACCCTATTACA GTAACAGAATCTGATGCTGTTGATGTTGTTGAGAATGCATTAAAGCATCATGCCTCTGATCTTACAACTAAAGCAATGGCATTGATTGCTCTATTGAAGC TATCTTCCCGTTTTCCATCTTGTTCAGGGAGGATCAAGGACATAATTTCCCAAAATAAAGGAAACCTTGTGCTTGAGTTGCAGCAGAGATCCCTCGAGTT CAATTCGATAATTGAGAAGCACCAGAACATAAGGTCTGCTCTTGTCGAGCGGATGCCAGTTCTCGATGAAGCTACCTTTGGCGGAAGAAGAGCTAGCTCA CTACCAAGTACCGGCTCAACTTCCACCGGTACTGCGGTGAAACTTCCAAACGGAGTTGCGAAACCCTCTGCAGCTCCTCTAGTAGATCTGCTCGATCTTT CCGACGATGCACCCGCCCCTAGTTCTTCCGGCGGCGATTTCCTTCAGGATCTACTTGGTGTGGATTTAGCACCTGGCACATTATCAGGCACAAGCCAGGC ACCAAAGGCGGGAACGGATGCGCTATTAGATCTGTTGTCTATCGGCTCCACACCCGATATTTTATCGTCAGCTCAAGAGAATAAACCTGCAATTGCCTCG TTAGATGTGCTAGCAACTCCTCCCCCTGCTCATGCTGCTTCTTCCACAGCTTCAAATATGATGGATTTGTTGGATGGCTTTGCTCCAGCTTCACCAAAGC CTGCCGACAACGGTCCAGCTTATCCACCTATAGTCGCGTTTGAGAGCAGCACGTTGCGCCTAACCTTCAACTTCTCAAAGCAACCCGTGAACCCCCAGAC AACGACAATTTCTGCCACTTTCACAAACCTTTCAAGTAACGTCTTATCAGACTTCGTTTTCCAGGCTGCAGTTCCGAAGTTTCTGCAACTGAACTTAGAT CCCGCTAGCGGTAATAGCCTACCCGCTGGTGGCAATGGGACCATCACACAGACATTGAAAGTCACAAACAGTCAGCACGGGAAGAAGCCACTTGTGATGC GTATAAGGATAGCATACAAGAATGAGAACAAAGACGTGCTGGAGGAAGGACAGATCAACAACTTCCCCCGAAACTTGTGA
AA sequence Show only first row Show all	>Lus10012988 pacid=23149848 polypeptide=Lus10012988 locus=Lus10012988.g ID=Lus10012988.BGIv1.0 annot-version=v1.0 MAMAGMDMIRAIRACKTAAEERAVVRKECAAIRASINENDNDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLML VTNSVKQDLNHTNQYIVGLALCALGNICSSEMARDLAPEVERLLQFRDPNIRKKAALCSVRIIKKVPDLAENFINPVAALLKEKHHGVLITGVQLCTDLC KVSPEALEYFRKKCTDGLVRTLRDLVNSPYAPEYDIAGITDPFLHIRLLRLLRVLGHGDADASDVMNDILAQVATKTESNKNAGNAILYECVETIMSIED NGGLRVLAINILGRFLSNRDNNIRYVALNILMRAISVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELVDYLEVSDQDFKGDLT ARICSIIEKYSPEKIWYIDQMLKVLTEAGNFVKDEVWHALVVVISNASDLHGYTVRALYRSFQTSAEQETLVRVAVWCIGEYGDLLVNNAGILDVEDPIT VTESDAVDVVENALKHHASDLTTKAMALIALLKLSSRFPSCSGRIKDIISQNKGNLVLELQQRSLEFNSIIEKHQNIRSALVERMPVLDEATFGGRRASS LPSTGSTSTGTAVKLPNGVAKPSAAPLVDLLDLSDDAPAPSSSGGDFLQDLLGVDLAPGTLSGTSQAPKAGTDALLDLLSIGSTPDILSSAQENKPAIAS LDVLATPPPAHAASSTASNMMDLLDGFAPASPKPADNGPAYPPIVAFESSTLRLTFNFSKQPVNPQTTTISATFTNLSSNVLSDFVFQAAVPKFLQLNLD PASGNSLPAGGNGTITQTLKVTNSQHGKKPLVMRIRIAYKNENKDVLEEGQINNFPRNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	0	1
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	2.0	0.9345
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	2.2	0.9489
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018282 [exp]	3.0	0.9211
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	4.0	0.9386
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	4.1	0.9147
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	4.7	0.9194
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	4.9	0.9192
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	5.0	0.9293
AT3G17900			unknown protein		Lus10030797 [exp]	5.7	0.9001
AT5G54920			unknown protein		Lus10040755 [exp]	6.6	0.8936

Compare expression of checked genes

Lus10012988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.