Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70280 490 / 6e-170 NHL domain-containing protein (.1.2) AT1G23880 451 / 6e-154 NHL domain-containing protein (.1) AT5G14890 284 / 4e-87 NHL domain-containing protein (.1) AT3G14860 205 / 6e-60 NHL domain-containing protein (.1.2) AT1G23890 140 / 8e-38 NHL domain-containing protein (.1.2) AT1G56500 47 / 3e-05 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029176 [exp] 850 / 0 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10030850 [exp] 580 / 0 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10039484 [exp] 333 / 4e-108 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10039421 [exp] 277 / 1e-89 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10014529 [exp] 256 / 2e-79 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10032158 [exp] 253 / 2e-78 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10030637 [exp] 208 / 5e-62 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10030849 [exp] 129 / 1e-32 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030639 [exp] 76 / 1e-14 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147700 [exp] 588 / 0 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 572 / 0 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 405 / 7e-137 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 217 / 2e-63 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 214 / 4e-63 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 137 / 1e-35 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 132 / 6e-34 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.008G122450 [exp] 54 / 3e-09 AT1G23880 49 / 3e-08 NHL domain-containing protein (.1) Potri.009G072933 [exp] 52 / 1e-08 AT1G23880 44 / 7e-07 NHL domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01436 [flax] [poplar] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Lus10012989 pacid=23149861 polypeptide=Lus10012989 locus=Lus10012989.g ID=Lus10012989.BGIv1.0 annot-version=v1.0 ATGGGTGCAATGGGGAAGAATGTTTTGGTTTTGTGCGTCATGGGCTTATTTCTCTTTGCCGCCGGTGGGGTCTCTTCAGCTCCTGTCAACTCTCCTGCCA AAATCGTAAATGGCATTTTCTCGAACACCTTGTCTGCGATATTGAAATGGGTATGGTCGCTCAAGGCCTCAAGCAAAACAGCTATGACTGGTCGTCCGTT GATGAAGTTTGAGCCTGGTTACACTGTGGAGACCATGTTCGATGGAAGCAAAGCTGGGATCGATCCTCACTCTGTTGAAGTTCTTCCCAGTGGGGAGCTT CTGATTCTTGACTCTGCTAACAATAACCTTTACAAGATTCCTTCATCTCTGTCCATGTATACAAAGCCTAAGCTGGTTGCTGGATCTGCTGATGGATATT CTGGATATGTTGATGGGAAGCCCGGCGAGGCGAAGATGAATAACCCTAAGGGAGTCGCTGTCGATGACCGGGGGAACATATATGTCGCGGACACGATGAA TAATGCCATCAGGAAGATCAGTGATTCAGGGGTTACGACGATTGCCGGAGGGAAACGAGCGAACGGAGGAGGAGGCGGCAGCCATGTAGATGGAGCGAGT GAAGATGCGAAATTCTCGAATGATTTCGATGTGGTTTACATGGGAAGCAGTTGCTCCCTCCTTGTGATCGACAGAGGAAACAGAGCCATTAGGGAGATCC AGCTCCACTTTGATGACTGTGCTTATCAGTATGGAAGTGGCTTCCCATTTGAGATCGCACTCCTTCTGGCTGCTGGCCTTCTCGGCTACTTGGTCGCTTT CCTCCAGCGTAGGATGGTAACGATTGCTTCTTCTTCGCAGGATCATCAACGTGTGATGAAGCCGAGCATGGCTGAAGCAGCTCCAGCTCCGAAACCACTC AAGTCGGTCCGTCCACCGTTGATCCCAACCGAAGATGATCAGGAGAAGCAAGAGGAGACCTTCTTTGTATCTCTCGGGAAGCTTTTCGCCAATACTAGCT CGTCCTTTATGGAGATAGTGGGGGGAATAGTTCCTGGGTTGAGAAAGAAGTCATCAGTTACTTATCAGTTCCAAAGCCAGCAGCATCAGCATCAGCATCA ACAAAGACAGACAGCAGGTTGGCCTAGCCAGGAGAGCTACGTAATACGAGACGAAGACGAGCCACCCACTGTCGAAGCCAGGACTCCTACACCAAGGAGA AAGACATACGCTTTCATGTCCAAGGATGCTGAGAAGATGCAAAGGTGGAGACAAGGCCGCTCATTCTATAGCGGTCAGGACGGTGAGTCACCTCCACCAC AACAGCAGCAGCATCAACAACAGCATCAGCAGCATTCGCAGGCGCAGTCTCAGAAGCAGTCGAAGCATCACCTTCGCAGGTATCAGTCATCAGTGTCCGC TGTTCCACACACTTACTACGAGCAGAGCCATGAGGAGACTAATGAGATAGTGTTTGGAGCTGTCCAAGAGCACGATGCAAAGGCTCGCGCTCCGGTGGTT AAGCCTGTGGATTACGGTGGCGTTCGAGTCCGTTCCAGCTCTTCTGTTGCATATGGGAATGGGTTCTGCTGA
AA sequence Show only first row Show all	>Lus10012989 pacid=23149861 polypeptide=Lus10012989 locus=Lus10012989.g ID=Lus10012989.BGIv1.0 annot-version=v1.0 MGAMGKNVLVLCVMGLFLFAAGGVSSAPVNSPAKIVNGIFSNTLSAILKWVWSLKASSKTAMTGRPLMKFEPGYTVETMFDGSKAGIDPHSVEVLPSGEL LILDSANNNLYKIPSSLSMYTKPKLVAGSADGYSGYVDGKPGEAKMNNPKGVAVDDRGNIYVADTMNNAIRKISDSGVTTIAGGKRANGGGGGSHVDGAS EDAKFSNDFDVVYMGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFPFEIALLLAAGLLGYLVAFLQRRMVTIASSSQDHQRVMKPSMAEAAPAPKPL KSVRPPLIPTEDDQEKQEETFFVSLGKLFANTSSSFMEIVGGIVPGLRKKSSVTYQFQSQQHQHQHQQRQTAGWPSQESYVIRDEDEPPTVEARTPTPRR KTYAFMSKDAEKMQRWRQGRSFYSGQDGESPPPQQQQHQQQHQQHSQAQSQKQSKHHLRRYQSSVSAVPHTYYEQSHEETNEIVFGAVQEHDAKARAPVV KPVDYGGVRVRSSSSVAYGNGFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70280			NHL domain-containing protein ...		Lus10012989 [exp]	0	1
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10036384 [exp]	1.0	0.8970
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029587 [exp]	2.6	0.8055
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	2.8	0.8520
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034665 [exp]	3.5	0.8467
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10017868 [exp]	3.9	0.8441
AT4G01200			Calcium-dependent lipid-bindin...		Lus10008731 [exp]	6.9	0.8245
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	8.5	0.8465
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10000280 [exp]	10.6	0.7681
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	13.1	0.7982
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	14.4	0.7995

Compare expression of checked genes

Lus10012989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.