Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23870 1328 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G60140 1306 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT1G70290 1300 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT4G17770 1152 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 1097 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G06410 1068 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT2G18700 1036 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 432 / 9e-139 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 416 / 4e-131 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT4G27550 408 / 1e-129 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029175 [exp] 1737 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Lus10030853 [exp] 1586 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10030635 [exp] 1565 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10034585 [exp] 1118 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1100 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10005425 [exp] 1069 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015509 [exp] 1068 / 0 AT2G18700 1168 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Lus10015231 [exp] 1068 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 1067 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078500 [exp] 1276 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 1259 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.003G094500 [exp] 1160 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 1137 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1124 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.004G061500 [exp] 1107 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.008G136500 [exp] 1105 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.011G070900 [exp] 1089 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.006G175500 [exp] 1075 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.018G097700 [exp] 1073 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10012990 pacid=23149866 polypeptide=Lus10012990 locus=Lus10012990.g ID=Lus10012990.BGIv1.0 annot-version=v1.0 ATGGTGTCAAGATCGTGTACAAATTTTTTGGATCTCGTTTCTGGGAATCTGCTCGACATCCCTCAGTCTCCAACGCCGCTTCCCAAAGTGATTACCGTCC CCGGAATTATCTCTGACGTAGATTGTTATGGGACTAACAATGATGGCGAGGCAGAGATCTCGTCTTATGTTCATTGCAAGAGGAGAATTGTTGTGGCAAA TATGTTGCCTCTGCATGCTAAAAAGAACGCGGAAGCTGGCAAGTGGCGCTTCAGTTTGGACGAGGATTCTCTTCTTCTTCAACTGAAGGATGGTTTTCCT CATGAAACTGAGTTTTATTATGTTGGTTGTTTAAAGGTTGACGTAGATCCTAGTGAACAGGAAGAAGTTGCCTTGAAGCTGCGGGAGGATTTTAACTGCG TGCCAGTATTTCTACCGCCCGAGCTTAGGAAGAAGTTCTACCTCGGTTTCTGCAAACAGCAGCTGTGGCCTTTGTTCCATTACATGCTGCCTATGTGCCA AGACCATGGTGATCGCTTTGACCGGTCTCTTTGGCAGACCTATGTTTCTGCAAACAAGATGTTTGCTGACAAGGTTATGGAAGTACTCTATCCAGATGAA GATTATGTGTGGATTCAGGACTATCATTTGATGGTTCTTCCGACCTTTCTAAGAAAGCGCTATAATCGGGTTAAACTAGGATTCTTCCTGCACAGCCCCT TCCCCTCGTCAGAAATATACCGAACACTTCCAGTTCGTGATGAAATACTAAGGGGATTACTGAACTGCGATCTGATTGGTTTTCAAACATTTGATTACGC CAGGCACTTCCTTTCCTGTTGCAGTAGAATGCTGGGGTTGGACTATGAATCCAAGAGGGGGCACATTGGGCTTGATTATTTCGGCCGGACAGTGTATATT AAGATATTACCTGTAGGGATCCATATGGGCCGCCTGGAATCAGTGATGAACCTTCCTGCAACAGCTGCAAAAATCAAGGAGATTCAGCAGCAGTTCAAAG GGAAAAAGCTTATTCTTGGTGTTGACGATATGGACATATTTAAAGGCATCAGTCTTAAATTATTGGCCATGGAACAACTTTTGCAGCAGCATCCAGATTT ACAAGGGAAAGTGGTCATGATTCAGATTATAAACCCAGCAAGGGGATTGGGAAAAGATGTTCAAGAAACCAGGAGGGAAACCTATTCAACTGCCAAAAGG ATCAATGAGGTCTACGGCTCTTCAGATTACGAGCCTGTGGTTCTGATTGATCGTCCAGTTCCTCGCTATGAGAAAACTGCTTATTATGCTCTGGCCGAAT GCTGCATAGTGAATGCTGTGAGAGATGGGATGAACTTAGTGCCTTACAAGTATATTGTCTGCAGGCAAGGAACGCCCTTTATGAACGAAGCTTTGGGTAT AAACCCAGATTCTCCCCGGACTAGCATGATCGTTGTCTCCGAGTTTGTCGGTTGCTCACCTTCTTTAAGTGGAGCAATTAGGGTGAACCCATGGGACATT GACGCCGTTGGTGATGCCTTGAGTTTGGCCGTCACCATGGAAGAGTCCGGTAAAGAGTTGCGGCATGAGAAGCACTACAAGTATGTAAGTACTCACGACG TGGCCTATTGGGGACGGAGCTTCATGCAGGATCTGGATAGAGCCTGCCAAGATCATTATCGTAAAAGGTGTTGGAGTATCGGTTGGGGGCTGGGATTTAG AGTTGTGTCTCTCAACCCAAGCTTCAGGAGGTTGGGTGTCGATCGTATTCTTTCAGCTTACAAAAGGACACATAGAAGAGCAATTTTCCTCGACTATGAT GGTACTGTGATTCCTGAAAAGTCCATGGTCAAGAATCCTGATTCCGAAGTTATCTCTGTACTGAAATCTCTATCCAGTGATCCCAATAACACTGTGTTTA TTGTAAGTGGAAGAGGGAGAAGTCCGCTGAGTGGCTGGCTCGACCCATGCGAAAGGCTCGGCATTGCAGCTGAACATGGGTTCTTCATAAGGTGGAATAA GAGCTCCGATTGGGAAATCTACCAGGTGGCTGCTGATCTAGACTGGAAAAAGATCGTGGAGCCTATTATGAGACTATACACAGAAGCCACAGATGGTTCG AGTATAGAGATTAAGGAAAGTGCTATAGTGTGGCACTATCAGTATGCTGATCCTGATTTCGGTTCGTGTCAGTCGAAGGAATTAATGGATCATCTCGAGA ATGTCCTCGCAAATGAGCCAGTAGTCGTGGAGAGGGGTCAAAATATCGTGGAAGTTAAACCACAGGGTGTCAGCAAAGGTGTGGTTGCAGAGAAGGTCCT CGATAACATGGCCGAAAACGGAAACCCACCGGATTTCATTATGTGCATTGGAGATGACAGATCAGACGAAGACATGTTCGAGAGCATACTAAGTAGAGTG TCCCATCCAGCCCTCCCGGCTGCTCCAGAGGTATTCGCATGCACCGTCGGGCAAAAACCAAGCAAGGCTAAATACTTCCTCGACGATGCAGCCGATGTAG TGAAACTCCTACAAGGCCTCTCAACCGGCTCGTCCAGCTCCAAACCCAGGGTTCTCAATACACAGCAAACCCACGTCTCGTTCGAGAGTGTTGTTTAG
AA sequence Show only first row Show all	>Lus10012990 pacid=23149866 polypeptide=Lus10012990 locus=Lus10012990.g ID=Lus10012990.BGIv1.0 annot-version=v1.0 MVSRSCTNFLDLVSGNLLDIPQSPTPLPKVITVPGIISDVDCYGTNNDGEAEISSYVHCKRRIVVANMLPLHAKKNAEAGKWRFSLDEDSLLLQLKDGFP HETEFYYVGCLKVDVDPSEQEEVALKLREDFNCVPVFLPPELRKKFYLGFCKQQLWPLFHYMLPMCQDHGDRFDRSLWQTYVSANKMFADKVMEVLYPDE DYVWIQDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFQTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVYI KILPVGIHMGRLESVMNLPATAAKIKEIQQQFKGKKLILGVDDMDIFKGISLKLLAMEQLLQQHPDLQGKVVMIQIINPARGLGKDVQETRRETYSTAKR INEVYGSSDYEPVVLIDRPVPRYEKTAYYALAECCIVNAVRDGMNLVPYKYIVCRQGTPFMNEALGINPDSPRTSMIVVSEFVGCSPSLSGAIRVNPWDI DAVGDALSLAVTMEESGKELRHEKHYKYVSTHDVAYWGRSFMQDLDRACQDHYRKRCWSIGWGLGFRVVSLNPSFRRLGVDRILSAYKRTHRRAIFLDYD GTVIPEKSMVKNPDSEVISVLKSLSSDPNNTVFIVSGRGRSPLSGWLDPCERLGIAAEHGFFIRWNKSSDWEIYQVAADLDWKKIVEPIMRLYTEATDGS SIEIKESAIVWHYQYADPDFGSCQSKELMDHLENVLANEPVVVERGQNIVEVKPQGVSKGVVAEKVLDNMAENGNPPDFIMCIGDDRSDEDMFESILSRV SHPALPAAPEVFACTVGQKPSKAKYFLDDAADVVKLLQGLSTGSSSSKPRVLNTQQTHVSFESVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	0	1
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	2.4	0.9630
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	2.4	0.9593
AT1G18270			ketose-bisphosphate aldolase c...		Lus10002140 [exp]	2.4	0.9602
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10031322 [exp]	3.6	0.9405
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	4.0	0.9529
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	5.2	0.9464
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	5.7	0.9467
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	7.0	0.9494
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	7.3	0.9340
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028246 [exp]	7.7	0.9449

Compare expression of checked genes

Lus10012990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.