Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47850 372 / 7e-125 CCR4 CRINKLY4 related 4 (.1) AT3G55950 276 / 2e-87 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT3G59420 253 / 6e-78 ACR4 crinkly4 (.1) AT1G67720 220 / 1e-65 Leucine-rich repeat protein kinase family protein (.1) AT1G69790 209 / 2e-65 Protein kinase superfamily protein (.1) AT3G20530 207 / 9e-65 Protein kinase superfamily protein (.1) AT3G07070 207 / 2e-64 Protein kinase superfamily protein (.1) AT1G24030 205 / 2e-64 Protein kinase superfamily protein (.1.2) AT1G26970 205 / 1e-63 Protein kinase superfamily protein (.1) AT5G02290 204 / 1e-63 NAK Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029170 [exp] 543 / 0 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10028285 [exp] 285 / 1e-90 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10040663 [exp] 272 / 9e-86 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 271 / 1e-85 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10000764 [exp] 244 / 1e-74 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 244 / 1e-74 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10037051 [exp] 225 / 6e-67 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 222 / 2e-66 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10040050 [exp] 209 / 1e-65 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078300 [exp] 463 / 5e-160 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 442 / 7e-152 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.010G188600 [exp] 300 / 3e-96 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.008G068700 [exp] 299 / 6e-96 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 281 / 2e-89 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.017G029900 [exp] 243 / 2e-74 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 239 / 8e-73 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.018G138900 [exp] 208 / 4e-65 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.010G093700 [exp] 207 / 1e-64 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G145900 [exp] 204 / 6e-64 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10012995 pacid=23149827 polypeptide=Lus10012995 locus=Lus10012995.g ID=Lus10012995.BGIv1.0 annot-version=v1.0 ATGGGGATCTTCATCAAACACCAAGAGGACAAAGACAAGGCGTTCGTCCACGAGCTCGAATCGCTATCCCGACTACACCACAAGAACCTGGTGAGACTGT TGGGATTCTGCGAGGACACCACCGAACGGATCTTAGTCTACGAGTACATGGAAAACGGGAGCCTCCACGACCACCTCCACCAGCTCGATGAGTCCCCTAT GGCCACGTGGTCCGCCCGGATCAAGGTGGCACTCGACGCGGCTCGAGGAATCGAGTACCTCCACGTGTACTCGGTACCGCCGATAATCCATCGCGACATC AAGTCCTCCAATATTCTCCTTGACGGCTCGTGGAACGCCAAGGTGTCCGATTTCGGACTCTCGCTGATGGGTCCCGCGGACGAGGAGTCCCACCTGTCTA TGCGAGCTGCGGGGACGGTGGGGTACATGGACCCGGAATACTACCGACTCCAACAGTTGACGACAAAGAGCGATGTCTACAGTTTCGGGATAGTGATGCT CGAAATGTTGTCGGGGTACAAGGCTATACACAAGAACGAGAATGGAGTGCCAAGGAATGTGGTTGATTACGTTGTGCCGTACATCGTACATGATGAGATA CACAGGGTTTTAGACTCGAGAGTGCCGCCTCCGACGCCATTCGAGATAGAGGCAGTGGCGTATGTCGGGTACTTGGCCGCCGATTGTGTGACATTGGAAG GTCGAGATAGGCCGTCCATGACAGACATTGTAGATAGTTTGGAAAGAGCATTGTCCGCCTGTTTAGTTCATTCGCTCTCCCGATCAACTACCGGCTCTTC CGGATAG
AA sequence Show only first row Show all	>Lus10012995 pacid=23149827 polypeptide=Lus10012995 locus=Lus10012995.g ID=Lus10012995.BGIv1.0 annot-version=v1.0 MGIFIKHQEDKDKAFVHELESLSRLHHKNLVRLLGFCEDTTERILVYEYMENGSLHDHLHQLDESPMATWSARIKVALDAARGIEYLHVYSVPPIIHRDI KSSNILLDGSWNAKVSDFGLSLMGPADEESHLSMRAAGTVGYMDPEYYRLQQLTTKSDVYSFGIVMLEMLSGYKAIHKNENGVPRNVVDYVVPYIVHDEI HRVLDSRVPPPTPFEIEAVAYVGYLAADCVTLEGRDRPSMTDIVDSLERALSACLVHSLSRSTTGSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10012995 [exp]	0	1
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	2.2	0.8325
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	4.2	0.8272
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	5.8	0.7544
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	9.5	0.7698
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	12.1	0.8278
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	13.9	0.8019
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	14.7	0.7963
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	15.4	0.7737
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	18.0	0.7523
					Lus10018325 [exp]	19.3	0.7614

Compare expression of checked genes

Lus10012995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.