Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23820 485 / 2e-172 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 478 / 3e-170 SPDS2 spermidine synthase 2 (.1) AT5G53120 378 / 2e-130 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT5G19530 103 / 8e-25 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029169 [exp] 592 / 0 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10030629 [exp] 526 / 0 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10030861 [exp] 510 / 0 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 465 / 2e-165 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10019016 [exp] 394 / 2e-136 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10003398 [exp] 386 / 1e-133 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10018259 [exp] 322 / 2e-109 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2) Lus10040649 [exp] 132 / 2e-36 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10004913 [exp] 100 / 2e-23 AT5G19530 441 / 2e-156 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094600 [exp] 497 / 8e-178 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 486 / 1e-173 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 388 / 2e-134 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 375 / 3e-129 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.006G222200 [exp] 87 / 4e-19 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G089200 [exp] 87 / 5e-19 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 82 / 3e-17 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10012996 pacid=23149830 polypeptide=Lus10012996 locus=Lus10012996.g ID=Lus10012996.BGIv1.0 annot-version=v1.0 ATGACTCAAGAAACTGTTGCAGCATCGACCGATTTGCCCGTCAAAAGGCTCAGAGAGGAAGACGACAACGCAGCATCACCCGCCGCCCCCGCCGGCGAAG CCATGGAAACCGACAGCGTAGCTGAAAATGGAACTCCCAATGTTTCCACCGTAATCCCTGGCTGGTTCTCCGAGATGAGCCCAATGTGGCCCGGAGAGGC ACATTCTTTGAAGGTGGAGAAGATCTTGTTCCAGGGGAAGTCTGATTACCAGAATGTCATGGTCTTTCAGTCAGCTACATATGGAAAGGTTCTGGTTTTG GATGGGGTGATCCAGCTCACAGAGAGGGATGAATGTGCTTACCAAGAAATGATTACTCACCTCCCACTCTCTTCCATCCCCAACCCTAAGAAGGTTTTGG TTATTGGTGGAGGAGATGGTGGTGTCCTGAGAGAAGTGGGGCGGTATTCTTCCGTTGAGCAGATAGATATTTGTGAAATTGATAAGATGGTTGTTGATGT ATCTAAACAGTTCTTCCCAGAAGTAGCAATCGGATACGAGGATTCCCGTGTTAACCTCCATATCGGTGATGGTAAGCTTCATCTCGATAATCTTGTCACA TTGATACGCAATCTGTATGTTAAAGTTCTTAACTTTTCTGCAGGAGTGGCATTTTTGAAGGCTGTTCCTGAAGGGACATATGACGCAGTCATCGTAGACT CTTCTGACCCAATAGGTCCTGCACAGGAATTATTTGAGAAGCCATTCTTCCAGTCAGTAGCAAACGTTCTTCGCCCAGGTGGAGTTGTGTGTACTCAGGC CGAAAGCATATGGCTTCATATGCACATCATCGAAGATATCGTGATAAACTGCCGCCAGATCTTCAAAGGCTCCGTCAACTATGCATGGACCACAGTCCCT ACATATCCAAGTGGAGTGATTGGTTTCATGCTGTGCTCTACTGAAGGACCCTCTGTGGATTTCAAGAATCCAGTGAGTTCGATCGACATGAACACTGACT ATAACAAGGCAAGAGGGCCTCTCAAGTTCTACAATCCCGAGATTCATGCTGCTGCATTCTGCCTACCGGCTTTCGCAAAGAAGGTGATCGAGTCGAAGGC TAAATGA
AA sequence Show only first row Show all	>Lus10012996 pacid=23149830 polypeptide=Lus10012996 locus=Lus10012996.g ID=Lus10012996.BGIv1.0 annot-version=v1.0 MTQETVAASTDLPVKRLREEDDNAASPAAPAGEAMETDSVAENGTPNVSTVIPGWFSEMSPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSATYGKVLVL DGVIQLTERDECAYQEMITHLPLSSIPNPKKVLVIGGGDGGVLREVGRYSSVEQIDICEIDKMVVDVSKQFFPEVAIGYEDSRVNLHIGDGKLHLDNLVT LIRNLYVKVLNFSAGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVANVLRPGGVVCTQAESIWLHMHIIEDIVINCRQIFKGSVNYAWTTVP TYPSGVIGFMLCSTEGPSVDFKNPVSSIDMNTDYNKARGPLKFYNPEIHAAAFCLPAFAKKVIESKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10012996 [exp]	0	1
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10026020 [exp]	3.2	0.9036
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	3.7	0.9262
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	10.8	0.8951
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	13.0	0.8685
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	13.6	0.8893
AT2G16980			Major facilitator superfamily ...		Lus10025087 [exp]	15.6	0.8485
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	16.4	0.8602
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	17.3	0.8782
AT3G12410			Polynucleotidyl transferase, r...		Lus10039591 [exp]	17.4	0.7928
AT1G62870			unknown protein		Lus10004325 [exp]	19.0	0.8510

Compare expression of checked genes

Lus10012996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.