Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60170 567 / 0 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) AT1G70400 206 / 1e-63 unknown protein AT5G27120 113 / 3e-26 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G05060 112 / 6e-26 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 104 / 8e-24 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 99 / 7e-22 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 97 / 5e-21 NOP56-like pre RNA processing ribonucleoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029168 [exp] 819 / 0 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10027881 [exp] 230 / 5e-71 AT1G60170 198 / 4e-60 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10002830 [exp] 151 / 2e-43 AT1G60170 135 / 7e-39 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10027882 [exp] 128 / 9e-35 AT1G60170 148 / 2e-43 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10033846 [exp] 114 / 9e-27 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 114 / 1e-26 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10004143 [exp] 112 / 4e-26 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 112 / 4e-26 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10002831 [exp] 94 / 1e-22 AT1G60170 112 / 2e-30 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102800 [exp] 697 / 0 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.002G176000 [exp] 689 / 0 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.005G045600 [exp] 116 / 3e-27 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.013G032300 [exp] 114 / 2e-26 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.015G092900 [exp] 98 / 3e-21 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 96 / 2e-20 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09785 [flax] [poplar] Prp31_C Prp31 C terminal domain PF01798 [flax] [poplar] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10012997 pacid=23149874 polypeptide=Lus10012997 locus=Lus10012997.g ID=Lus10012997.BGIv1.0 annot-version=v1.0 ATGAACAAATTTACAGAGAAACAGTACAGTGGCCCAGGATCACAGACCGATCTAAGGCAAAACTACAGCTGTCCAAAACATACAGTCCGTCAGAAAACAA AAAGCATCCCCACGATGTTAAAAACAAGCCCTGAAAACCCAGAGACACCACCATGGAAAGGCGTCCCCTTCCAAACAAAAGAAAGCAGCCCACAAAAGCA GGGGATGCACCACAGAACAAAGAAAAACCAGCAACCAACGGGACCAAAGACTTTGATAGCCTTGAAGGCAAATCTCGGCGATTCGTTTCTTGCGGATCTT GACGAGTTATCTGACAATGAAGCTGAAGATATCGAAGAACAAGATGGCGATGTGGCAAATATGGACGAAGATGTGGACGGGGACTTGGCAGATATCGAAG CTCTCAATTATGATGATTTAGACTCGGTGTCGAAGCTGCAGAATTCACAGAGGTACAATGACATAATGCAGAAAGTGGAAGAGGCATTAGTGAAAGGTTC TTACACCGAGGATCAAGGGACGGTCTTGGAAGATGATCCCGAGTACCAACTGATTGTGGATTGCAATGCATTGTCTGTGGACATAGAGAACGAGATCATC ATTATCCACAACTTCATTCGCGACAAGTACCGGTTAAAATTTCCAGAGCTGGAGTCGCTAGTGCACCATCCTATTGATTATGCTCGCGTGGTGAAGAGAA TCGGGAACGAGATGGACTTAACCCTTGTTGATCTGGAAGGTCTTTTGCCCTCGGCCATCATTATGGTTGTTTCAGTGACAGCATCGACGACAAGTGGTAA ACCTCTTCCCGATGATGTGCTCCAAAAGACTACTGATGCGTGTGATCGAGCTCTTACTCTGGATTCCGCAAAGAAAAAGGTTCTTGATTTTGTAGAGAGT AGAATGGGATACATCGCACCTAACGTGTCTGCAATCGTTGGGAGTGCTGTGGCAGCAAAACTCATGGGCACTGCTGGTGGTCTTACATCGTTGGCCAAGA TGCCTGCTTGTAACGTTCAACTTCTCGGAGCTAAGAAGAAGACCCTTGCCGGGTTTTCCAGTGCAACATCTCAATTTCGTTTGGGTTATATCGAGCAATC TGATATATTTCAGAGTACACCCCCTTCCTTGAGGATGCGTGCTTGTAGACTGCTGGCTTCCAAATCGACACTTGCAGCTCGTGTCGATTCCATCAGAGGA GATCCTTCTGGAAACACGGGAAGAACTCTCCGAGAAGAGATCAGTAAGAAGATAGAGAAGTGGCAAGAGCCTCCTCCTGCCAAGCAACCTAAACCACTAC CAGTCCCTGATTCAGAGCCTAAGAAAAAGAGAGGTGGGCGACGTCAAAGGAAGATGAAAGAGAGATATGCAGTTACAGACATGAGGAAGCTTGCCAACAG GATGCAGTTTGGGATCCCTGAAGAGAGCTCGCTAGGTGATGGTCTAGGAGAAGGGTATGGAATGCTTGGTCAGGCAGGAAGCGGGAAGCTCCGAGTAGCA GCGAGCCAGAGCAAACTTGCTGCTAAAGTAGCAAAGAAATTCAAGGAAAAGCACTATGGCAGCAGTGGAGCTACATCCGGTCTCACTTCAAGTCTGGCAT TCACACCTGTGCAGGGGATTGAGCTGAGCAATCCACAAGCGCATGCACACCAATTAGGAGGAGGCGGAACTCAAAGTACCTACTTCTCGGAGACCGGTGC CTTTTCGAATATCAAGAGGAACTGA
AA sequence Show only first row Show all	>Lus10012997 pacid=23149874 polypeptide=Lus10012997 locus=Lus10012997.g ID=Lus10012997.BGIv1.0 annot-version=v1.0 MNKFTEKQYSGPGSQTDLRQNYSCPKHTVRQKTKSIPTMLKTSPENPETPPWKGVPFQTKESSPQKQGMHHRTKKNQQPTGPKTLIALKANLGDSFLADL DELSDNEAEDIEEQDGDVANMDEDVDGDLADIEALNYDDLDSVSKLQNSQRYNDIMQKVEEALVKGSYTEDQGTVLEDDPEYQLIVDCNALSVDIENEII IIHNFIRDKYRLKFPELESLVHHPIDYARVVKRIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPDDVLQKTTDACDRALTLDSAKKKVLDFVES RMGYIAPNVSAIVGSAVAAKLMGTAGGLTSLAKMPACNVQLLGAKKKTLAGFSSATSQFRLGYIEQSDIFQSTPPSLRMRACRLLASKSTLAARVDSIRG DPSGNTGRTLREEISKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRQRKMKERYAVTDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVA ASQSKLAAKVAKKFKEKHYGSSGATSGLTSSLAFTPVQGIELSNPQAHAHQLGGGGTQSTYFSETGAFSNIKRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	0	1
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	2.6	0.9246
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	3.3	0.9469
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	4.5	0.9456
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	5.7	0.9383
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	5.7	0.9443
AT1G33110			MATE efflux family protein (.1...		Lus10013626 [exp]	6.0	0.9192
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	8.5	0.9295
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10027093 [exp]	10.0	0.9066
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	10.2	0.9296
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	10.6	0.9139

Compare expression of checked genes

Lus10012997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.