Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23800 865 / 0 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 829 / 0 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 562 / 0 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48170 363 / 4e-120 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 357 / 6e-118 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 321 / 1e-103 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 203 / 2e-58 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G24270 201 / 4e-58 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT2G14170 188 / 3e-53 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G54100 179 / 1e-49 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029166 [exp] 1017 / 0 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10023625 [exp] 538 / 0 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 538 / 0 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 532 / 0 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10019387 [exp] 405 / 3e-134 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10034115 [exp] 342 / 3e-111 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 340 / 6e-111 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10043245 [exp] 332 / 4e-109 AT3G24503 487 / 2e-170 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043470 [exp] 328 / 7e-107 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189900 [exp] 875 / 0 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G074100 [exp] 860 / 0 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 844 / 0 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.018G075000 [exp] 566 / 0 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.015G070600 [exp] 360 / 4e-119 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 352 / 5e-116 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 324 / 9e-105 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.006G186800 [exp] 215 / 3e-63 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G109700 [exp] 214 / 7e-63 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G020600 [exp] 210 / 2e-61 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10012999 pacid=23149802 polypeptide=Lus10012999 locus=Lus10012999.g ID=Lus10012999.BGIv1.0 annot-version=v1.0 ATGGCTGCACGAAGGATCTCTTGTTTTCTCTCTCGTTCCATTTCTTCTGGCTCTGGATCTGCCCTGCTTTTCAGAGGAGGCAAGAGATTGGTGGGGTGTG GAATCAACAGGTACACCACTGCTGCAGCTGCTGAAGAACCCATTACTCCACCTGTCAGTGTTCCTCATACCCAACTCCTCATTAATGGCAGATTCGTTGA TGCTGCTTCTGGTAAGACATTCAAAACTTTGGACCCAAGAACTGGGGAAGTGATTGCCGATGTCGCTGAAGGTGATCTCGAGGATGTCAATCGAGCCGTC GCTGCTGCTCGCAAGGCATTCGATGAAGGACCGTGGCCTAGGCTTCCTGCTTTTGAAAGGCAGAAGATACTGCTGAAGTGTGCCGATTTGGTCGACAAGC ACAACGATGACATTGCGGCTCTCGAGACATGGGACAATGGCAAGCCTTTTGAACAGTCTGCTAAAATCGAAGTTCCAATGTTTGCGAGGCTCTTTCGATA CTATGCCGGTTGGGCTGATAAGATCCATGGCCTGACCGTCCAGGCCGATGGACCTTACCACGTGCAAACCTTACACGAACCGATTGGAGTTGCAGGGCAG ATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCCTGGAAGGTCGGCCCGGCTTTAGCAACTGGGAACACCATTGTTCTCAAGACTGCTGAGCAAACTC CTTTGTCTGCTCTCTATGTCGCCAGGCTATTCCACGAGGCTGGACTTCCTGATGGTGTCTTGAACATAGTTTCCGGGTTCGGTCCTACCGCTGGTGCAGC TCTTGCAAGCCATATGGACGTCGACAAGCTTGCTTTCACTGGATCAACCGACACGGGAAAGATTGTTCTGGAGCTAGGAGCGAAAAGCAACTTGAAGCCG GTTACTTTGGAGCTTGGAGGGAAATCCCCTTTCATCGTTTGTGAGGATGCTGATGTCGATCAGGCTGTCGAGCTTGCTCATTTCGCTTTGTTCTTTAACC AGGGCCAATGCTGCTGTGCTGGCTCTCGTACATTTGTGCACGAGAAAGTTCACGACGAATTTGTCGCGAAGGCTAAGGCCCGTGCTTTGAAGCGCTCCGT TGGTGACCCATTCAAGTCCGGTATCGAGCAAGGTCCTCAGGTTGATTCAGATCAGTTTGATAAGATCCTCAAGTACATTAGATCCGGAGTCGACAGTGGA GCTACCCTCGAAGCTGGAGGCGAACGATTCGGTTCCAAGGGCTACTACATCCAGCCTACAGTCTTCTCAGATGTCAAGGATGATATGCTGATTGCGAAAG ATGAGATCTTTGGACCGGTTCAAACAATTCTCAAGTTCAAGGACATTAATGAGGTGATCAAGAGATCGAACGCGAGCCGGTATGGACTTGCAGCGGGTGT ATTTACCCAGAACATAGACACAGCTAACACCTTGACAAGAGCGCTAAGAGCCGGGACGGTGTGGATCAACACCTTCGACATATTCGACGCTGCGATCCCC TTTGGTGGATACAAGATGAGCGGCCACGGAAGGGAGAAGGGTATCTACAGTCTGAGCAATTACTTGCAAGTCAAGGCAGTCGTTACCCCTTTGAAGAATC CTGCTTGGCTATAG
AA sequence Show only first row Show all	>Lus10012999 pacid=23149802 polypeptide=Lus10012999 locus=Lus10012999.g ID=Lus10012999.BGIv1.0 annot-version=v1.0 MAARRISCFLSRSISSGSGSALLFRGGKRLVGCGINRYTTAAAAEEPITPPVSVPHTQLLINGRFVDAASGKTFKTLDPRTGEVIADVAEGDLEDVNRAV AAARKAFDEGPWPRLPAFERQKILLKCADLVDKHNDDIAALETWDNGKPFEQSAKIEVPMFARLFRYYAGWADKIHGLTVQADGPYHVQTLHEPIGVAGQ IIPWNFPLLMFAWKVGPALATGNTIVLKTAEQTPLSALYVARLFHEAGLPDGVLNIVSGFGPTAGAALASHMDVDKLAFTGSTDTGKIVLELGAKSNLKP VTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHEKVHDEFVAKAKARALKRSVGDPFKSGIEQGPQVDSDQFDKILKYIRSGVDSG ATLEAGGERFGSKGYYIQPTVFSDVKDDMLIAKDEIFGPVQTILKFKDINEVIKRSNASRYGLAAGVFTQNIDTANTLTRALRAGTVWINTFDIFDAAIP FGGYKMSGHGREKGIYSLSNYLQVKAVVTPLKNPAWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	0	1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	2.0	0.8918
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	2.2	0.9074
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	3.0	0.8905
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	3.5	0.8818
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10027596 [exp]	6.5	0.8374
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	7.1	0.8515
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	8.4	0.8745
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	11.4	0.8374
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10037842 [exp]	15.4	0.8624
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10005226 [exp]	16.6	0.8527

Compare expression of checked genes

Lus10012999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.