Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10550 385 / 7e-135 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT2G01850 259 / 4e-85 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G14720 258 / 1e-84 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT1G32170 229 / 2e-73 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 226 / 9e-72 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT3G44990 202 / 2e-63 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT2G36870 199 / 2e-62 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT5G65730 198 / 7e-62 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT5G13870 197 / 2e-61 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT3G25050 197 / 2e-61 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029165 [exp] 549 / 0 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10029000 [exp] 258 / 2e-84 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10013240 [exp] 252 / 4e-82 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10030760 [exp] 250 / 1e-81 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10010427 [exp] 229 / 5e-73 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10026535 [exp] 215 / 3e-68 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 213 / 2e-67 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 205 / 2e-64 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 205 / 2e-64 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115000 [exp] 403 / 5e-142 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.008G138400 [exp] 260 / 1e-85 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.010G102300 [exp] 259 / 5e-85 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.001G136100 [exp] 240 / 2e-77 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 238 / 8e-77 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.009G163850 [exp] 230 / 2e-74 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.016G098600 [exp] 205 / 2e-64 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G006600 [exp] 203 / 7e-64 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.006G122900 [exp] 201 / 3e-63 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.002G244200 [exp] 198 / 7e-62 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10013000 pacid=23149860 polypeptide=Lus10013000 locus=Lus10013000.g ID=Lus10013000.BGIv1.0 annot-version=v1.0 ATGCTCTTCCCACTTCTGTATCTCCTGCTTCTTGCTGCAGCAGCATCAGGAGTTTCTTCACGTAACACCCCTTACACTCCTCCAAACGTCAAACGTTTGA CTGATCTCTTTGGTCCCTTAACCATTAATCAAGGTTTCAACACTTACTATGGCGGCCAGCATGTTAAGCAGTTCAATAATGGGTCCTTTGCCACTCTTTC CCTTGACAAAGCATCAGGAGCTGGGTTGGCATCTAAGAACAAATACTTATATGGGTTCTTCAGTGCTGCAATAAAGCTGCCTTCTGGTCTGTCTCCTGGA GTTGTGGTAGCCTTCTATTTGTCTAATGCAGAAACTTACCCTCACAACCACGACGAGATTGATTTCGAAATACTCGGACACGACAGGAAGAACGACTGGA ACTTGCAGACGAACGTGTACGCGAATGGGAGTGTGAACACTGGCAGGGAAGAGAAGTTCAACTTCTGGTTTGACCCTACTCAGGACTACCACAACTACAG CATCATTTGGAACAGCCACCACATAGTGTTTCTGGTGGATAGTGTACCAGTGAGGGAGTACAAGTACAACCCAACAGCATACCCAATGAAACCAATGAGT GTTATTGCAACAATATGGGATGGTTCAGAATGGGCAACAAATGGAGGGAAGTATCCAGTAAACTACAAGTATGCACCATTTGTGGTCTCAATTGGGGATG CTGAATTGGCTGGCTGCATTCCATATCCAGCTTCTTCTGGTTCTTGCTCCAAGACTAGCAGTAGTACTAGTAGTCCTTCAAGCTTGGATCCAGTGGATGG ATCAGAATTTGCTAGCTTGTCACAGGATCAGAGTTTGGCTATGGACTGGGCAAGGAGGAAGCTCATGTTCTACTCTTACTGTAGTGATAAACCTAGGTAC AAGGTCCCACCACCTGAATGTAAATGA
AA sequence Show only first row Show all	>Lus10013000 pacid=23149860 polypeptide=Lus10013000 locus=Lus10013000.g ID=Lus10013000.BGIv1.0 annot-version=v1.0 MLFPLLYLLLLAAAASGVSSRNTPYTPPNVKRLTDLFGPLTINQGFNTYYGGQHVKQFNNGSFATLSLDKASGAGLASKNKYLYGFFSAAIKLPSGLSPG VVVAFYLSNAETYPHNHDEIDFEILGHDRKNDWNLQTNVYANGSVNTGREEKFNFWFDPTQDYHNYSIIWNSHHIVFLVDSVPVREYKYNPTAYPMKPMS VIATIWDGSEWATNGGKYPVNYKYAPFVVSIGDAELAGCIPYPASSGSCSKTSSSTSSPSSLDPVDGSEFASLSQDQSLAMDWARRKLMFYSYCSDKPRY KVPPPECK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	0	1
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	1.7	0.8443
					Lus10024338 [exp]	2.0	0.8438
AT3G07470			Protein of unknown function, D...		Lus10004300 [exp]	2.4	0.7792
AT2G19770		PRF5	profilin 5 (.1)		Lus10006846 [exp]	3.5	0.7950
AT1G57680			unknown protein		Lus10008924 [exp]	4.5	0.7681
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	8.8	0.7644
AT5G01710			methyltransferases (.1)		Lus10001267 [exp]	9.2	0.7862
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	15.1	0.7906
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	15.9	0.7790
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10027064 [exp]	17.2	0.7780

Compare expression of checked genes

Lus10013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.